PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g045390.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 475aa MW: 53525.1 Da PI: 4.7555

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g045390.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.6	2.9e-24	378	428	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k+++l+d+++ F+lpi+ AAk++++c+TvLK+iCR+ ++RWPhRkiksl Csa02g045390.1 378 TKSLTLKDINMLFHLPIETAAKQMNLCPTVLKKICRKGSLMRWPHRKIKSL 428 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50053	15.601	1	79	IPR000626	Ubiquitin domain
SMART	SM00213	1.8E-11	1	75	IPR000626	Ubiquitin domain
SuperFamily	SSF54236	4.37E-16	1	81	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	9.9E-15	1	76	No hit	No description
Pfam	PF00240	3.7E-13	3	75	IPR000626	Ubiquitin domain
PROSITE profile	PS51519	16.483	368	448	IPR003035	RWP-RK domain
Pfam	PF02042	7.8E-21	380	428	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MKIVVETLEG TRFEIEVALK DSVAKVKKNI ENVVGDSTYP AAQQILSHKG KVLRDETTME 60 ANKVIEKSVI VIMMTKYQSL RPLVQSSALE VDEGEDPYND SFGGFEQCTE EDFSNFMADP 120 NPNLMDMSFL ENSPPPLDFS TLAIDVDETK LLHKFDLSIA DYDINNEFEE LSFVDDGFTI 180 SWDMFEPSND DDLNENINND VLGEIGKDNG TNNVGEITKL EVSTRVFSDP NGPDFESGGT 240 STMDLLVSTT SDEMLVCSCC KMLRELVHIK DGEMSTLEIF GGIGFFCHAI LLTQWFASDS 300 TERQSQTFHL KDLTMEELPP MLTIPLRTDV PMYLVSPDEA LDVPLVPLHV GPREEPTTGV 360 RKERKKRKTP LATQRERTKS LTLKDINMLF HLPIETAAKQ MNLCPTVLKK ICRKGSLMRW 420 PHRKIKSLHT KITSLKSLVH TAKNDEVKAR TEAEIERLQR RIDKICCDAL KHVK*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MKIVVETLEG TRFEIEVALK DSVAKVKKNI ENVVGDSTYP AAQQILSHKG KVLRDETTME  60
ANKVIEKSVI VIMMTKYQSL RPLVQSSALE VDEGEDPYND SFGGFEQCTE EDFSNFMADP  120
NPNLMDMSFL ENSPPPLDFS TLAIDVDETK LLHKFDLSIA DYDINNEFEE LSFVDDGFTI  180
SWDMFEPSND DDLNENINND VLGEIGKDNG TNNVGEITKL EVSTRVFSDP NGPDFESGGT  240
STMDLLVSTT SDEMLVCSCC KMLRELVHIK DGEMSTLEIF GGIGFFCHAI LLTQWFASDS  300
TERQSQTFHL KDLTMEELPP MLTIPLRTDV PMYLVSPDEA LDVPLVPLHV GPREEPTTGV  360
RKERKKRKTP LATQRERTKS LTLKDINMLF HLPIETAAKQ MNLCPTVLKK ICRKGSLMRW  420
PHRKIKSLHT KITSLKSLVH TAKNDEVKAR TEAEIERLQR RIDKICCDAL KHVK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g045390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL391148	7e-42	AL391148.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T21H19 (ESSA project).
GenBank	CP002688	7e-42	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010485077.1	0.0	PREDICTED: uncharacterized protein LOC104763398
TrEMBL	A0A1R7T3I3	1e-153	A0A1R7T3I3_ARATH; RWP-RK domain protein
STRING	XP_010446048.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	8e-12	RWP-RK domain-containing protein