PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g045000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 208aa    MW: 21940.5 Da    PI: 4.6044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g045000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-1469118155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  Csa02g045000.1  69 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPAPEMAAAAYDVAALALKG 118
                     5699**975..6*********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.55E-1769126IPR016177DNA-binding domain
PROSITE profilePS5103219.30970126IPR001471AP2/ERF domain
SMARTSM003804.2E-2670132IPR001471AP2/ERF domain
PfamPF008473.1E-871118IPR001471AP2/ERF domain
CDDcd000187.04E-1671126No hitNo description
PRINTSPR003676.7E-67182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-2571126IPR001471AP2/ERF domain
PRINTSPR003676.7E-6108128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSNTYSPTTG NQETTTSSRE VSIALPSKPS DQSPQSSPSS SSSPRPSSLA VAGGSPARRT  60
GTGLSGKHSF FRGIRLRNGK WVSEIREPRK TTRIWLGTYP APEMAAAAYD VAALALKGSD  120
AVLNFPGLAL TYVPPVSNSA ADIRAAASKA AEMKQPDPGE AEKVLDPTGQ PGKEEELVVE  180
VEEGLEFMDE EEMLNMPTLL TEMAEAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1461126572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g045000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154781e-130AB015478.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15.
GenBankAK1764641e-130AK176464.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-25-F17.
GenBankCP0026881e-130CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444260.11e-146PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ907e-83ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1J3IUE61e-83A0A1J3IUE6_NOCCA; Uncharacterized protein (Fragment)
TrEMBLR0GRU95e-84R0GRU9_9BRAS; Uncharacterized protein
STRINGXP_010444260.11e-145(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.17e-56ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]