PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g044870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 315aa    MW: 33717.2 Da    PI: 6.916
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g044870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.71.3e-3565151373
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec 73 
                     +k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++ ++ti WLl+ a+pai+e+tgt                +++s+++c
  Csa02g044870.1  65 KKRLPTKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSEGETIRWLLERAEPAIIEATGTgtvpaiavsvngtlkiPTTSPNDC 151
                     67889**********************************************************555555555555554433333445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.3E-2970144IPR005333Transcription factor, TCP
PROSITE profilePS5136927.04870124IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MESNREGKAI REIDENVDQV VTMTNLFDPD PKTNPGLLMK KEQVGFLQPS AMMTMSNSLE  60
PAPKKKRLPT KDRHTKVEGR GRRIRMPAGC AARVFQLTRE LGHKSEGETI RWLLERAEPA  120
IIEATGTGTV PAIAVSVNGT LKIPTTSPND CGGDGDLTKR RKRNCTSNFV DVNEHDSCYS  180
SVTSGLAPIT VSNYGVNIMN VNTQGLVPFW PMGMGMGIGM GTAFVTGDPN QMGQMWAIPT  240
VATAPFLNLG TTPVSSYVSD ASPAAEPQME TSGGEGGGTQ SLRDFSLEIY DKKELQFLGG  300
SGNSSPSSSC HNKT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g044870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256231e-125AB025623.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJM18.
GenBankAK1185791e-125AK118579.1 Arabidopsis thaliana At5g51910 mRNA for unknown protein, complete cds, clone: RAFL19-81-E01.
GenBankBT0087791e-125BT008779.1 Arabidopsis thaliana At5g51910 mRNA, complete cds.
GenBankCP0026881e-125CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444076.10.0PREDICTED: transcription factor TCP19-like
SwissprotQ9LT891e-145TCP19_ARATH; Transcription factor TCP19
TrEMBLR0EXS11e-172R0EXS1_9BRAS; Uncharacterized protein
STRINGXP_010444076.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-136TCP family protein