PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g039410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 194aa    MW: 22877.7 Da    PI: 4.5773
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g039410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.31.3e-31171381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF+P de+lv eyL+kkv ++++++   ++e++ ++v+PwdL     +++ke+y+F+k+++++    rk r t sgyW++  + +ev+++
  Csa02g039410.1  17 LPPGFRFDPDDEDLVFEYLAKKVLHRPMDF--DLPELRSCNVDPWDLL---GEKNKEVYYFVKKEERE----RKGRETLSGYWEECEE-EEVMEA 101
                     79*************************999..49*************6...56789*******99875....899*********8866.677776 PP

             NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++l g +kt++fy g++p+g+ t W+m e+rl
  Csa02g039410.1 102 gdreCSHLEGRRKTFAFYIGKRPRGTITPWIMYEFRL 138
                     45555666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-337165IPR003441NAC domain
PROSITE profilePS5100533.29817167IPR003441NAC domain
PfamPF023658.3E-1918138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MDISAQRFAM NGRSMRLPPG FRFDPDDEDL VFEYLAKKVL HRPMDFDLPE LRSCNVDPWD  60
LLGEKNKEVY YFVKKEERER KGRETLSGYW EECEEEEVME AGDRECSHLE GRRKTFAFYI  120
GKRPRGTITP WIMYEFRLIS SRATRWSTSL LSRGDLGKWR AVKVVVKEEN EEEMVEDELE  180
SDESDGEEVI QSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-191515015154NO APICAL MERISTEM PROTEIN
1ut4_B2e-191515015154NO APICAL MERISTEM PROTEIN
1ut7_A2e-191515015154NO APICAL MERISTEM PROTEIN
1ut7_B2e-191515015154NO APICAL MERISTEM PROTEIN
4dul_A2e-191515015154NAC domain-containing protein 19
4dul_B2e-191515015154NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g039410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0151500.0BT015150.1 Arabidopsis thaliana At5g50820 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442384.21e-139PREDICTED: NAC domain-containing protein 41-like
TrEMBLA0A178UQH21e-120A0A178UQH2_ARATH; NAC097
TrEMBLQ9FGQ11e-120Q9FGQ1_ARATH; NAC domain containing protein 97
STRINGXP_010442384.11e-131(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146661821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50820.18e-94NAC domain containing protein 97