PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g039190.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NF-YC

Protein Properties

Length: 141aa MW: 15156 Da PI: 4.2681

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g039190.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	76.6	3.5e-24	21	84	37	100
NF-YC 37 kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 +++ aea v++ska e+fi++lt+r+w+ha+enk +t++ diaaav rt++ dfl+d+v +e Csa02g039190.1 21 NKMEAEAAVVFSKASEMFIMDLTMRAWNHAHENKHTTIRGPDIAAAVGRTFTMDFLLDVVHVEE 84 6789*******************************************************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.04E-15	20	82	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.4E-16	22	80	IPR009072	Histone-fold
Pfam	PF00125	5.4E-7	23	67	IPR007125	Histone H2A/H2B/H3

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MENKSNQLPQ DNPKLKSYWL NKMEAEAAVV FSKASEMFIM DLTMRAWNHA HENKHTTIRG 60 PDIAAAVGRT FTMDFLLDVV HVEEEPDHED GELPPGMVIG TPVVDGSGIF GDVLEPWPGT 120 WTVAPVGEDV PGGSGGNGGN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-18	23	80	36	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g039190.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010472782.1	2e-99	PREDICTED: nuclear transcription factor Y subunit C-8-like
Swissprot	Q4PSE2	3e-30	NFYC8_ARATH; Nuclear transcription factor Y subunit C-8
TrEMBL	R0HYD5	9e-46	R0HYD5_9BRAS; Uncharacterized protein
STRING	XP_010472782.1	7e-99	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17675	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27910.1	5e-19	nuclear factor Y, subunit C8

Publications ? help Back to Top
Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]