PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g039160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YC
Protein Properties Length: 173aa    MW: 19102.2 Da    PI: 4.6819
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g039160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC168.39.2e-5323121199
           NF-YC   1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                     q++ +w++q+e++tdfkn++lPlarikki+kad+dv+m+sa+aPvl++kace+fi++lt rsw haeenkr+tl+ksdi+aav+ t ++dfl+d+
  Csa02g039160.1  23 QIRDYWIEQMENVTDFKNRQLPLARIKKIMKADPDVHMVSADAPVLFAKACEMFIVDLTNRSWRHAEENKRHTLQKSDISAAVAGTYTYDFLLDV 117
                     7899******************************************************************************************* PP

           NF-YC  96 vprd 99 
                     vp+d
  Csa02g039160.1 118 VPKD 121
                     **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.68E-3126133IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.3E-3434105IPR009072Histone-fold
PfamPF008087.5E-2242105IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MENNNQPPPS YSQPPQTESS NPQIRDYWIE QMENVTDFKN RQLPLARIKK IMKADPDVHM  60
VSADAPVLFA KACEMFIVDL TNRSWRHAEE NKRHTLQKSD ISAAVAGTYT YDFLLDVVPK  120
DADPGFGPMP HPDGVPQYYY PPGIYPSPPT QAWPGEAGEG EAEGSGRNGG GN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-4230120595NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g039160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442179.11e-127PREDICTED: nuclear transcription factor Y subunit C-6-like
SwissprotQ9FGP73e-84NFYC6_ARATH; Nuclear transcription factor Y subunit C-6
TrEMBLA0A384KFQ78e-82A0A384KFQ7_ARATH; NF-YC6
TrEMBLC0SVT28e-82C0SVT2_ARATH; Uncharacterized protein At5g50480 (Fragment)
STRINGXP_010442179.11e-126(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50480.14e-70nuclear factor Y, subunit C6
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]