PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g037810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 343aa    MW: 39209 Da    PI: 8.9035
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g037810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.48.7e-092665443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    e k +r v  skRr++++ KA  L+ L + ++av + s++
  Csa02g037810.1 26 ETKQQRAVACSKRRQTVFSKAADLCHLSGSNIAVFVTSPS 65
                    77999********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.0121565IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-151574IPR002100Transcription factor, MADS-box
CDDcd002663.13E-2016100No hitNo description
SuperFamilySSF554551.57E-1417101IPR002100Transcription factor, MADS-box
PfamPF003194.3E-82665IPR002100Transcription factor, MADS-box
PROSITE profilePS5118611.668166342IPR000182GNAT domain
PfamPF161993.7E-9207234IPR032432Radical SAM, C-terminal extension
SuperFamilySSF557291.34E-9224337IPR016181Acyl-CoA N-acyltransferase
Gene3DG3DSA:3.40.630.301.9E-10285339IPR016181Acyl-CoA N-acyltransferase
PfamPF136731.6E-6285335IPR000182GNAT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008080Molecular FunctionN-acetyltransferase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPSSSSASEF TMKKGTKRKI EIKKRETKQQ RAVACSKRRQ TVFSKAADLC HLSGSNIAVF  60
VTSPSEMSDV VYSFSGYSSA QEIADCYLNR KPPPKIEVKP QSKLGFWWED PDLYHSCDDL  120
SELNILEDRL ERVKKHMMAC LEKKEKSQSV SNYSEQNPSS TCSLDEDCDR STSHVVAHMM  180
PDLPNVWVER NMESFKEFFE SPSFRADGLK IYPTLVIRGT RLYELWKTGR YNFLVVKGET  240
FLLGLLRLRK CGKNVTCPEL MGKCSVVREL HVYGTAVPVH GREADKLQHQ GYGTLLMEEA  300
ERIARREHRS NKIGVISGVE TRHYYRKLGY ELEGPYMVKH LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6qk7_C1e-31175341290557Elongator complex protein 3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g037810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026881e-126CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019090030.11e-102PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLF4K2U31e-90F4K2U3_ARATH; AGAMOUS-like 39
STRINGXP_010455155.11e-102(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.16e-80AGAMOUS-like 39