PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa02g033460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 296aa MW: 33815 Da PI: 6.1218 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.2 | 3.7e-07 | 1 | 24 | 21 | 44 |
HHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 21 lKKAeELSvLCdaevaviifsstg 44 +KK +ELS+LC++ + iifs+ + Csa02g033460.1 1 MKKVNELSTLCGITSCAIIFSPYD 24 8********************865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 9.42E-12 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.09E-16 | 1 | 57 | No hit | No description |
Pfam | PF00319 | 1.3E-5 | 1 | 23 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 296 aa Download sequence Send to blast |
MKKVNELSTL CGITSCAIIF SPYDTTPEVW PSNSGVQKII SEFRTLPEMD KQKKMVDQEA 60 FLKQRIAKAI ENLRRQRKDN RELEMTEVMF QCLIGNIGMF HLNIMDLNDL GYLIEQYLKD 120 VNRRVEILQN LGIEIGKSSS TVAATSEGSR LMVDLVATTT PTATTYEVGS SSSYAAVTTL 180 LNPIQQQQIF RPTAPQIGVY QPRQNLNLNL NNNNNQNQQQ WFMEMTNHEQ MRYPSEPMKF 240 SFMDDNHHNH NHIHHHQEEN QHQIDGESST ALDAANSNST IPVTYPNNTN NLWFH* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00553 | DAP | Transfer from AT5G48670 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa02g033460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010471368.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 1e-125 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A178UE43 | 1e-123 | A0A178UE43_ARATH; FEM111 | ||||
STRING | XP_010471368.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-121 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
---|---|---|---|
|