PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g030810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 152aa    MW: 17346.1 Da    PI: 10.4596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g030810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-173685255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykG+r +k +g+WvAeIr+p   +kr+r++lg++ ta  Aa+a++ a  +l+g
  Csa02g030810.1 36 RYKGIRMRK-WGKWVAEIREP---NKRTRIWLGSYKTAVAAARAYDTAVFYLRG 85
                    8******99.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.61E-283595No hitNo description
SuperFamilySSF541712.94E-213694IPR016177DNA-binding domain
PfamPF008477.6E-113685IPR001471AP2/ERF domain
PROSITE profilePS5103222.3523693IPR001471AP2/ERF domain
SMARTSM003806.0E-373699IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-303694IPR001471AP2/ERF domain
PRINTSPR003672.3E-113748IPR001471AP2/ERF domain
PRINTSPR003672.3E-117595IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MIEIEYKRKQ DFPMVKEGLV MNEKPKRNPM SPKEKRYKGI RMRKWGKWVA EIREPNKRTR  60
IWLGSYKTAV AAARAYDTAV FYLRGPSARL NFPEHVFQDR NGGEGVGGDI SATLIRQKAA  120
EVGARVDAEL RSENTMVEKL DMNKLPEAYG L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1633104270ATERF1
3gcc_A2e-1633104270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00430DAPTransfer from AT4G06746Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g030810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438722.11e-108PREDICTED: ethylene-responsive transcription factor RAP2-9
SwissprotQ8W3M31e-84RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9
TrEMBLA0A178U6511e-81A0A178U651_ARATH; RAP2.9
STRINGXP_010438722.11e-107(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.19e-76related to AP2 9
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]