PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g026630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | DBB | ||||||||
Protein Properties | Length: 251aa MW: 27407.2 Da PI: 4.6428 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17 | 1.2e-05 | 4 | 44 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 C+ +e+ e++ C +++ lC+ C + H+ H+ Csa02g026630.1 4 LCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEAnkifqrhHR 44 7*****************************76778888444 PP | |||||||
2 | zf-B_box | 25.2 | 3.3e-08 | 60 | 97 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH..kgHt 38 ++ C+ ++e + +fC +++ llC+dC ++H ++H+ Csa02g026630.1 60 APLCDICQERKGYFFCIEDRALLCNDCDGAIHtcNSHQ 97 689******99********************9434487 PP | |||||||
3 | zf-B_box | 17.8 | 6.8e-06 | 161 | 186 | 15 | 38 |
zf-B_box 15 qlfCedCqqllCedClleeH..kgHt 38 +fC +++ llC+dC ++H ++H+ Csa02g026630.1 161 YFFCIEDRALLCNDCDGAIHtcNSHQ 186 69*****************9434487 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.153 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.72E-5 | 3 | 47 | No hit | No description |
SMART | SM00336 | 4.4E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.186 | 58 | 101 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.5E-11 | 58 | 101 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.3E-6 | 60 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.68E-7 | 61 | 101 | No hit | No description |
SMART | SM00336 | 0.012 | 152 | 190 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.0029 | 157 | 190 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MKILCEVCEK AEAEVLCCSD EAVLCKPCDI KVHEANKIFQ RHHRVALQKD AASATTSSGA 60 PLCDICQERK GYFFCIEDRA LLCNDCDGAI HTCNSHQRFL LPGVQVSDQS LTENSGCSTS 120 FSSETYQTHS KASLNSQYSN EETEAGNSAE IDKNPSERKG YFFCIEDRAL LCNDCDGAIH 180 TCNSHQRFLL PGVQVSDQSL TENSGCSTSF SSETYQTHSK ASLNSQYSNE ETEAGNSAEI 240 DKNPSVILNP * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g026630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY122916 | 1e-180 | AY122916.1 Arabidopsis thaliana putative zinc-finger protein (At4g10240) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010437394.1 | 1e-111 | PREDICTED: B-box zinc finger protein 23 | ||||
Swissprot | O82617 | 9e-92 | BBX23_ARATH; B-box zinc finger protein 23 | ||||
TrEMBL | D7LY29 | 8e-95 | D7LY29_ARALL; Zinc finger (B-box type) family protein | ||||
STRING | XP_010437394.1 | 1e-110 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12502 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10240.1 | 4e-94 | DBB family protein |
Publications ? help Back to Top | |||
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