PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g026430.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 341aa MW: 38918.4 Da PI: 7.4401

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g026430.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.2	1.6e-53	9	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+++yLkkk++ +k+e+ evi+evd++k+ePwdL++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + Csa02g026430.1 9 VPPGFRFHPTDEELLHYYLKKKISYHKFEM-EVIREVDLNKLEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCI 102 69**************************.99**********964444222455********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + +++g++ktLvfykgrap+g+ktdW+mheyrle Csa02g026430.1 103 RN-SYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 138 9.8999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-60	8	160	IPR003441	NAC domain
PROSITE profile	PS51005	58.018	9	160	IPR003441	NAC domain
Pfam	PF02365	8.7E-28	10	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MGSSSNGGVP PGFRFHPTDE ELLHYYLKKK ISYHKFEMEV IREVDLNKLE PWDLQERCKI 60 GSTPQNEWYF FSHKDRKYPT GSRTNRATHA GFWKATGRDK CIRNSYKKIG MRKTLVFYKG 120 RAPHGQKTDW IMHEYRLEDA DDPQANPSED GWVVCRVFMK KNLFKVVNEG GSSINSSDQH 180 IHDASNNHTL QARSFMNRDS PYQLVRNHGA TTFELNKPDL ALHQYPPIFH KPPTLGFDYS 240 SGLARDCESA ASEGLQYQQA CEPSLEVGTC ETVVSHNHQQ GLGEWGMMDR LVTCHMGNED 300 SSRGIRFEDG NNNSSSVVQP VPTTNQLTLR SEMDFWGYSK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	9	162	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	9	162	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	9	162	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	9	162	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-51	9	162	20	170	NAC domain-containing protein 19
3swm_B	2e-51	9	162	20	170	NAC domain-containing protein 19
3swm_C	2e-51	9	162	20	170	NAC domain-containing protein 19
3swm_D	2e-51	9	162	20	170	NAC domain-containing protein 19
3swp_A	2e-51	9	162	20	170	NAC domain-containing protein 19
3swp_B	2e-51	9	162	20	170	NAC domain-containing protein 19
3swp_C	2e-51	9	162	20	170	NAC domain-containing protein 19
3swp_D	2e-51	9	162	20	170	NAC domain-containing protein 19
4dul_A	2e-51	9	162	17	167	NAC domain-containing protein 19
4dul_B	2e-51	9	162	17	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g026430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY133681	0.0	AY133681.1 Arabidopsis thaliana clone C103095 putative NAM/NAP (At4g10350) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010437178.1	0.0	PREDICTED: protein BEARSKIN2-like
Swissprot	Q9SV87	0.0	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	R0FKW8	0.0	R0FKW8_9BRAS; Uncharacterized protein
STRING	XP_010437178.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5213	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	0.0	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]