PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g020550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 304aa    MW: 32986.6 Da    PI: 4.5233
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g020550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.5e-1994143255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdps    r  r++lg+f taeeAa  +++a+ +l+g
  Csa02g020550.1  94 KFRGVRQRP-WGKWAAEIRDPS----RrVRVWLGTFSTAEEAAVVYDNAAIQLRG 143
                     89*******.**********84....34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.4E-3193151IPR001471AP2/ERF domain
PROSITE profilePS5103224.02694151IPR001471AP2/ERF domain
SMARTSM003807.7E-4094157IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2194151IPR016177DNA-binding domain
CDDcd000186.80E-3294150No hitNo description
PfamPF008472.4E-1194143IPR001471AP2/ERF domain
PRINTSPR003672.9E-1095106IPR001471AP2/ERF domain
PRINTSPR003672.9E-10117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
METELKKLKN IVTQPRILRI SVTDPYATDS SSDEDEEQGF QAKRRRVKKY VNEVVLESVS  60
SDDKDKSMIT KKKRKRTVDT ASPAVVVNPA ATRKFRGVRQ RPWGKWAAEI RDPSRRVRVW  120
LGTFSTAEEA AVVYDNAAIQ LRGPDALLNF PPPPPDPVTE NTEEASTVAE ETSGSISGGG  180
ECLGSPVSVL RSPFSGESTA VKKEFFGVSA TVEVKDEPLS TLSGTFTDFS ESLFSNDDVF  240
GFSTPMTDSY GGDLFGGDLF EDMSFGFGFG SGSGYGSGFS SWHVEDHFQD IGDLFGSDPL  300
LAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2293151160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14246KRRRV
27176KKRKRT
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g020550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010435385.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
SwissprotO825031e-117CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLR0FFZ11e-120R0FFZ1_9BRAS; Uncharacterized protein
STRINGXP_010435385.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-93cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]