PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g015920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 1275aa    MW: 143165 Da    PI: 6.7168
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g015920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.6e-29228285159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +dDgy WrKYGqK+ kg  fprsYY+Ct++gC vkkkvers  d++v++ +Y+g Hnhe
  Csa02g015920.1 228 VDDGYYWRKYGQKSAKGEMFPRSYYKCTHPGCLVKKKVERSV-DGQVTQSVYKGAHNHE 285
                     59****************************************.***************8 PP
2WRKY99.71.8e-31382439259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDg++WrKYGqK+ kgs++prsYY+Ct  gC ++k+ver+a+dpkvv++tYeg+Hnh+
  Csa02g015920.1 382 DDGFRWRKYGQKVLKGSPYPRSYYKCTKMGCGMRKHVERAATDPKVVVTTYEGKHNHD 439
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5147715.33765135IPR003822Paired amphipathic helix
SuperFamilySSF477623.27E-1969133IPR003822Paired amphipathic helix
Gene3DG3DSA:1.20.1160.118.2E-1770133IPR003822Paired amphipathic helix
PfamPF026715.8E-1387132IPR003822Paired amphipathic helix
PROSITE profilePS5081123.915223287IPR003657WRKY domain
SuperFamilySSF1182908.76E-24224287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-25226287IPR003657WRKY domain
SMARTSM007749.9E-32228286IPR003657WRKY domain
PfamPF031063.7E-22229285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-33366441IPR003657WRKY domain
SuperFamilySSF1182901.57E-27373441IPR003657WRKY domain
PROSITE profilePS5081135.806376441IPR003657WRKY domain
SMARTSM007742.2E-36381440IPR003657WRKY domain
PfamPF031065.3E-25382439IPR003657WRKY domain
SuperFamilySSF522003.01E-8508630IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF520581.16E-416941003IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.7E-36699990IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.30.200.204.7E-1410981186No hitNo description
SuperFamilySSF561122.02E-4211021269IPR011009Protein kinase-like domain
SMARTSM002201.9E-1111181272IPR000719Protein kinase domain
PROSITE profilePS5001129.96911181274IPR000719Protein kinase domain
PfamPF000695.6E-3711191268IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.102.1E-2711871268No hitNo description
PROSITE patternPS00108012391251IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0007165Biological Processsignal transduction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1275 aa     Download sequence    Send to blast
MSEKEESTGA ADGTSDYYQR VGSSGERNNS SSSSDVDARF KRNSSTGLMV SQSPSVSTVS  60
SPCIGRLTTG ALAYLESVKE KFQDDKERYE TFLEVMKDYD DQSRDDTNGI IARVKDLFKD  120
HDDLLLGFNI FLPRWYQITL PPKDETPVEF LDKFEGTYGM TYQQVVAQAV QGIQAHVNMQ  180
PQSEYPPSSA FQSFPSGQPQ ILTPAPDSSV LAHSSTSGIT SIEPLNRVDD GYYWRKYGQK  240
SAKGEMFPRS YYKCTHPGCL VKKKVERSVD GQVTQSVYKG AHNHEPPKQG KRGSTTNLSG  300
SSIHNNRRSS GLAASQFSSN KQQETASDSE EVNSGDTAED EPETKRRIKE VEDWEPAAAT  360
SHRTVREPVF TVQTLSEVDL IDDGFRWRKY GQKVLKGSPY PRSYYKCTKM GCGMRKHVER  420
AATDPKVVVT TYEGKHNHDP PAARSRSHDS VIAENSANFV SFPPTSSKNL QDAELSIGFP  480
RSQSLFVDEA LTDFSDFFGP PSTSVTFSAS KDYDVVIRYG RGDISNDDFI SHLRASLCRR  540
GISVYEELNE GDAIPQCWVL IILLTSTYVP SNLLHILERQ HTDNLVIYPI FYRLSPNDFV  600
CNSKNYDIFF FQDEPKRWQA ALKEIAQMPG YTLTDKSESN LIDEIVRDTL KVLCYGDKIV  660
LSPEVYKTMS LELVKFSNGN PQGTSAIEGI FLDMSNLTFD AIPNVFEKMC NLRLLKLYCS  720
KVEEKHEVYF PQGLEYLPSK LRLLHWEHYP LSSLPKSFNP ENLVELNLSS SCTKKLWKGK  780
KARFKIMYYQ FSQNISLEKL KRMTLSYSYQ LTKIPRLSSA PNLELLDLEG CNSLLSISQS  840
ISYLTKLVFL NLKDCSKLES IPSMLSLESL EVLNLSGCIK LENFPEISPN VRELYMGGTM  900
IQEIPSSIKN LALLEKLDLE NSRHLKNLPT SICKLKHLKT LNLSGCTSLE RFPDLSRRMK  960
CLRFLDLSRT AIKELPSSIS YLTALEELRF VDSRNLIKFP IFTNPKASFT ELMPSESNKE  1020
VVVGSTIENR RGIKGVRPPV LNPPILRGSS WDFLTHFAPS GEEEAMEEKV KAEETGAMFI  1080
QSRDTEGCSF TTNKGDSSMT VSNTSSVYAS EGSIITSWQK GQLLGQGSLG SVYEGISGDG  1140
DFFAVKEVSL SLLDQGSRTQ ECIQQLEGGI ALLSQLQHQN IVRYRGTAKD KWNFYIFLEL  1200
VTQGSLQKLY QRYQLKDSVV SLYTRQILDG LNYLHDRGVI HRDIKCANVL VDANGAVKLA  1260
DFGLAKVLFP IINV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-38214442378Probable WRKY transcription factor 4
2lex_A6e-38214442378Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g015920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0496380.0AL049638.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F16J13 (ESSA project).
GenBankAL1615330.0AL161533.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084085.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 19
SwissprotQ9SZ670.0WRK19_ARATH; Probable WRKY transcription factor 19
TrEMBLA0A178UXA00.0A0A178UXA0_ARATH; WRKY19
TrEMBLB3H4T80.0B3H4T8_ARATH; Protein kinase family protein
TrEMBLF4JPV90.0F4JPV9_ARATH; Protein kinase family protein
STRINGXP_010433889.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM800346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.10.0WRKY family protein
Publications ? help Back to Top
  1. Su SH,Krysan PJ
    A double-mutant collection targeting MAP kinase related genes in Arabidopsis for studying genetic interactions.
    Plant J., 2016. 88(5): p. 867-878
    [PMID:27490954]