PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g012740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 534aa    MW: 58496.6 Da    PI: 6.8303
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g012740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30297355259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+  gCpv+k+v+r+aed +++++tYeg+Hnh+
  Csa02g012740.1 297 SDGCQWRKYGQKMAKGNPCPRAYYRCTMVnGCPVRKQVQRCAEDRTILITTYEGNHNHP 355
                     7***************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-34281357IPR003657WRKY domain
SuperFamilySSF1182907.19E-28289357IPR003657WRKY domain
PROSITE profilePS5081129.769291357IPR003657WRKY domain
SMARTSM007741.4E-36296356IPR003657WRKY domain
PfamPF031061.8E-26298355IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MFRFPVSLGG GPRDNTTQSD EQHHHRAVVD EVDFFRSAEK RDRVTRDEQN IIAADETHKV  60
HVKREINSRV DDNEDRSTDH INIGLNLLTA NTGSDESMVD DGLSVDMEEK RTKCENVQLR  120
EELKKASEDN QRLKEMLSQT TNNFNSLQMQ LVAVMRQQED HHHLATTENK DNAKNRHEVP  180
EMVPRQFIDL GPPSDEVSSE ERTTVRSGSP QSLLEKSSSR QNGKRVLVRE ESPETESNGW  240
RNPNKIPKHH GSSSNCGGNG NGNGNGNNNV IEQSAAEATM RKARVSVRAR SEAPMLSDGC  300
QWRKYGQKMA KGNPCPRAYY RCTMVNGCPV RKQVQRCAED RTILITTYEG NHNHPLPPAA  360
MSMASTTTAA ASMLLSGSTM SSQDGLMNPT NLLARTILPC SSSMATISAS APFPTITLDL  420
TDSSNGNNLT NNPLMQFSQR SGFAESNQSV LPHMMGQALY YNQQSKFSGL HMPSQPLNAG  480
ENVSAATAAI ASNPNFAAAL AAAITSIINS SNNQQNGNNS NSNVTTSNVD TRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22283359176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g012740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526500.0AY052650.1 Arabidopsis thaliana WRKY transcription factor 42 (WRKY42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432828.10.0PREDICTED: WRKY transcription factor 42-like
SwissprotQ9XEC30.0WRK42_ARATH; WRKY transcription factor 42
TrEMBLR0FDY10.0R0FDY1_9BRAS; Uncharacterized protein
STRINGXP_010432828.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.10.0WRKY family protein