PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g011460.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 367aa MW: 40464.1 Da PI: 9.6029

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g011460.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.8	7.6e-10	29	57	22	50
HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeys 50 KKA ELSvLC+ v i +++++ l+ ++ Csa02g011460.1 29 KKATELSVLCGNSVGFICYGPDNDLHVWP 57 9**************************98 PP
2	SRF-TF	28.2	2.4e-09	244	272	22	50
HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeys 50 KKA ELSvLC+ v i ++++ l+ ++ Csa02g011460.1 244 KKATELSVLCGNSVGFICYGPDKDLHVWP 272 9**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	8.536	11	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.06E-9	16	73	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.8E-7	28	56	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-10	230	306	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.8E-7	232	271	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MAPRDKVGGD DDLKRKKNYF KQIFPAFKKK ATELSVLCGN SVGFICYGPD NDLHVWPEPQ 60 DNPQALPEIV GKFQCVERSH EDESRLRSLQ LAISQGQKKM TTLKIRGNSK KLNDHLRVSD 120 NAAAIISNRK VAASSDDRLG FGEPGYVFRG SHETVVSSLG SSAAASKVFS VSDSSPLMLG 180 LSCGDYFPAT DNSRVIPSES ELRSSSLPLN IAPCDKIPNK SGGDDDLKKA KKKFFKQIFP 240 TFKKKATELS VLCGNSVGFI CYGPDKDLHV WPEPQDNPRA IPEIIGKFNG LSDHKRKNHA 300 SDLYDFPNLK GLSGDELRNH LINLESHLLV IKQKKLSISR RENSKQPKPR DICRIDLGFA 360 SSLVPS*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MAPRDKVGGD DDLKRKKNYF KQIFPAFKKK ATELSVLCGN SVGFICYGPD NDLHVWPEPQ  60
DNPQALPEIV GKFQCVERSH EDESRLRSLQ LAISQGQKKM TTLKIRGNSK KLNDHLRVSD  120
NAAAIISNRK VAASSDDRLG FGEPGYVFRG SHETVVSSLG SSAAASKVFS VSDSSPLMLG  180
LSCGDYFPAT DNSRVIPSES ELRSSSLPLN IAPCDKIPNK SGGDDDLKKA KKKFFKQIFP  240
TFKKKATELS VLCGNSVGFI CYGPDKDLHV WPEPQDNPRA IPEIIGKFNG LSDHKRKNHA  300
SDLYDFPNLK GLSGDELRNH LINLESHLLV IKQKKLSISR RENSKQPKPR DICRIDLGFA  360
SSLVPS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g011460.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019083117.1	1e-138	PREDICTED: uncharacterized protein LOC104700767 isoform X1
Refseq	XP_019083118.1	1e-138	PREDICTED: uncharacterized protein LOC104700767 isoform X1
Refseq	XP_019083119.1	1e-138	PREDICTED: uncharacterized protein LOC104700767 isoform X2
Swissprot	Q9ZUI9	2e-50	AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBL	D7KXQ5	3e-59	D7KXQ5_ARALL; Uncharacterized protein
TrEMBL	R0I988	7e-59	R0I988_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010424594.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11232	9	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60040.1	9e-48	AGAMOUS-like 49

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]