PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g011430.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 455aa    MW: 51606.6 Da    PI: 6.2842
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g011430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.66.7e-4261353128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     +G+rF+Pt eel+++yLk+k+ gk+  ++e+i+e++i+++eP  Lp  +k+++++  wyfFs+++ +++++k ++r+t sgyWkatg d+++++k
  Csa02g011430.1   6 VGYRFSPTGEELINHYLKNKILGKTWLVDEAISEINICSYEPFYLPslAKIQSDDLVWYFFSPKEYTSSKKKVTKRTTGSGYWKATGVDRKIKDK 100
                     7************************999999***************5448888888**************************************9 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ ++g+kktLv+y+gr p+g+ t Wvmhey++
  Csa02g011430.1 101 rgNRGEIGIKKTLVYYEGRVPNGVWTPWVMHEYHI 135
                     666667***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100545.4334153IPR003441NAC domain
SuperFamilySSF1019413.27E-465153IPR003441NAC domain
PfamPF023653.9E-246135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MLKDLVGYRF SPTGEELINH YLKNKILGKT WLVDEAISEI NICSYEPFYL PSLAKIQSDD  60
LVWYFFSPKE YTSSKKKVTK RTTGSGYWKA TGVDRKIKDK RGNRGEIGIK KTLVYYEGRV  120
PNGVWTPWVM HEYHITCLPQ DQRNYVICQV MYKGEDGDIP FGGNYSSEPS QSIVSDSNSV  180
RAAVNRAPKF EQPGQENIFG MSEDDLKSPM NEREDLSLWD VLHPDMLFSD NNSPTLQPQT  240
PHLAPNDDEF LGGLIHINRE QVEYLFANEE FISTPTTYMQ ENRSDHRPKK PLSGIILDYS  300
CDTDSDAESI SATSYQGTSS PGGESVGSSN SHSQTGLDEM ISLNKDLQTS HEPSISRKTR  360
QSQLKQEMKL ETSRASGASI DKKSYMAKTE KNGWLVYYRG SSGEKPEDST VYLSREDDHR  420
LHSLARSHWQ HHIGTNSQIR LMKTLVLIFN SVFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-25713518140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g011430.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456147.10.0PREDICTED: NAC domain-containing protein 69
SwissprotQ9M1260.0NAC69_ARATH; NAC domain-containing protein 69
TrEMBLR0GRZ70.0R0GRZ7_9BRAS; Uncharacterized protein
STRINGXP_010456147.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.10.0NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]