PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g007650.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HB-other

Protein Properties

Length: 515aa MW: 57618.6 Da PI: 7.7875

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g007650.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.7e-18	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le+++++++yp++e++ +LA+++gLte+qV+ WF+ rR k+k+ Csa02g007650.1 24 KKRKLKTPIQVMTLENFYNEHKYPTEEMKGKLAEEIGLTEKQVSGWFCHRRLKDKR 79 8999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-19	10	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.584	20	80	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-17	22	86	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-18	22	84	IPR001356	Homeobox domain
CDD	cd00086	1.20E-16	24	80	No hit	No description
Pfam	PF00046	1.7E-15	24	79	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MCSFLTDSGE APADGDKAST ENSKKRKLKT PIQVMTLENF YNEHKYPTEE MKGKLAEEIG 60 LTEKQVSGWF CHRRLKDKRS VKEDGTNIGS QDRSSIVLQD RGSGLRQDSC GSTKQTDYWN 120 TKPREVESQR LYGGSYMGNA DGEDSTSSER SSSLHKNLVS SKDGIRDVES SRYVTHNDVI 180 QHPHVMRSYE YKKPSGYLKV KRASENVSIT AVKRQLGRQY QEDGPPLGIQ FDPLPPGAFE 240 PQTNAIVQEP IYVGNQRRPH PPHLLGTRKS FNPGPSYELT RKLKMHSPDP DSEEEEEDDD 300 NIMIGMEPGL RDRKSLGEPR LKSPSPSFYN TVPNHKPFQE TFNGSPRELP VTNNKKGRIS 360 SKSWAEGSRN NMIANFDNLP GNNIKTNQTH NYDKKIFNGG HKTGYLTKSS KLLPPSRSRS 420 PDSIDRGPSS VMAGKFHGER NQTITHREKL HSTDEPLVTK RVKDGYLQQD YAPKSSYSEI 480 LEREGQINGS GVELASSLSG DDDETDESSS SSMD*

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MCSFLTDSGE APADGDKAST ENSKKRKLKT PIQVMTLENF YNEHKYPTEE MKGKLAEEIG  60
LTEKQVSGWF CHRRLKDKRS VKEDGTNIGS QDRSSIVLQD RGSGLRQDSC GSTKQTDYWN  120
TKPREVESQR LYGGSYMGNA DGEDSTSSER SSSLHKNLVS SKDGIRDVES SRYVTHNDVI  180
QHPHVMRSYE YKKPSGYLKV KRASENVSIT AVKRQLGRQY QEDGPPLGIQ FDPLPPGAFE  240
PQTNAIVQEP IYVGNQRRPH PPHLLGTRKS FNPGPSYELT RKLKMHSPDP DSEEEEEDDD  300
NIMIGMEPGL RDRKSLGEPR LKSPSPSFYN TVPNHKPFQE TFNGSPRELP VTNNKKGRIS  360
SKSWAEGSRN NMIANFDNLP GNNIKTNQTH NYDKKIFNGG HKTGYLTKSS KLLPPSRSRS  420
PDSIDRGPSS VMAGKFHGER NQTITHREKL HSTDEPLVTK RVKDGYLQQD YAPKSSYSEI  480
LEREGQINGS GVELASSLSG DDDETDESSS SSMD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g007650.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010430803.1	0.0	PREDICTED: uncharacterized protein LOC104715048
TrEMBL	R0HBG1	0.0	R0HBG1_9BRAS; Uncharacterized protein
STRING	XP_010430803.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	0.0	HB-other family protein