PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g005830.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HB-other

Protein Properties

Length: 926aa MW: 102826 Da PI: 8.7633

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g005830.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.1	9.6e-06	62	118	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ + L+++F+ + +s++e +e+++ g+t +qV+ +F ++++ +k Csa02g005830.2 62 KRPRDLLNPKAAKYLQAVFAVKDAISKRESREISALFGITVAQVRDFFVTQKTRVRK 118 799*********************************************999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.329	59	119	IPR001356	Homeobox domain
SMART	SM00389	4.9E-4	61	123	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.69E-5	61	121	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-4	62	121	IPR009057	Homeodomain-like
CDD	cd00086	0.00717	62	119	No hit	No description
Gene3D	G3DSA:1.20.930.10	2.6E-5	224	318	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	7.32E-6	227	320	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 926 aa Download sequence Send to blast
MDEIEIGSSV ESLMELLDSQ KELFHSQIDQ LQDVVVAQCK LTGVNPLAQE MAAGALSIKI 60 GKRPRDLLNP KAAKYLQAVF AVKDAISKRE SREISALFGI TVAQVRDFFV TQKTRVRKQV 120 RLSREKLILP NSDAIRGDGV PENNNATNHV DPVPLNSVHP EACSISWGEG ETVTLMPPED 180 IPPDISDSDK YFVENIFSLL GKEETFSGQV KLMEWIMQIQ DSSVLIWFLS KGGVLILTTW 240 LSQAAAEEQT SVLLLILKVL CHLPLHKASP ENMSAILQSV NGLRFYRTSD ISNRAKGLLS 300 RWTKLFAKIQ AMKKQNRNNS QIDSQSQLLL KQSIAEIMGD TSNPEDILSL TNGRSENVRR 360 IESSQGPKLL LTSADDSTKK HMLGSTPSYN KERRKVQMVE QPGQKAAGKS PQTVRIGTSS 420 RSRPMSADDI QKAKMRALYM QSKNSKKDPL PSAIGDSKTI VPEKPLALQS SKDFPPSQNS 480 EAKTEDTNVP SVEPSAIQPV NGPAIIVPIQ TDEIKKPFLT PSKSISNKVG ILVKMSPQTI 540 LKNCKRIQID WHVPPGMELD EAWRVAAGGN SKEADVQRNR NRRERETTYQ SLQNIPLNPK 600 EPWDREMDYD DSLTLEIPSL QSPEESSTEP QESLDERRTT AGAATTSSSI SCPEPDLELL 660 AALLKNPDLV YALTSGKPSN LAGQDMVKLL DVIKTGAPTS SSSSNKQVEE KVEVSLPSPT 720 PATNPGMSGW GQEAIRNPFS RQNQVGAAVA RSGTHLHVTS MQWKSTNEQA IPRHATAAYN 780 NSVILSHTER QQQQQQQMQP QLHHNHHLQQ QPISTTSYAV REPVGQMGTA TSSGSWRSQQ 840 SQNSYYSHQG NEIALASQAS SYQGNNQQYM SSNREYESWS PDHSPSRNHP NVRGQQQQQQ 900 QQQQQPSRKY DSSSHPYWNQ NKRWR*

Sequence ? help Back to Top

Protein Sequence Length: 926 aa Download sequence Send to blast

MDEIEIGSSV ESLMELLDSQ KELFHSQIDQ LQDVVVAQCK LTGVNPLAQE MAAGALSIKI  60
GKRPRDLLNP KAAKYLQAVF AVKDAISKRE SREISALFGI TVAQVRDFFV TQKTRVRKQV  120
RLSREKLILP NSDAIRGDGV PENNNATNHV DPVPLNSVHP EACSISWGEG ETVTLMPPED  180
IPPDISDSDK YFVENIFSLL GKEETFSGQV KLMEWIMQIQ DSSVLIWFLS KGGVLILTTW  240
LSQAAAEEQT SVLLLILKVL CHLPLHKASP ENMSAILQSV NGLRFYRTSD ISNRAKGLLS  300
RWTKLFAKIQ AMKKQNRNNS QIDSQSQLLL KQSIAEIMGD TSNPEDILSL TNGRSENVRR  360
IESSQGPKLL LTSADDSTKK HMLGSTPSYN KERRKVQMVE QPGQKAAGKS PQTVRIGTSS  420
RSRPMSADDI QKAKMRALYM QSKNSKKDPL PSAIGDSKTI VPEKPLALQS SKDFPPSQNS  480
EAKTEDTNVP SVEPSAIQPV NGPAIIVPIQ TDEIKKPFLT PSKSISNKVG ILVKMSPQTI  540
LKNCKRIQID WHVPPGMELD EAWRVAAGGN SKEADVQRNR NRRERETTYQ SLQNIPLNPK  600
EPWDREMDYD DSLTLEIPSL QSPEESSTEP QESLDERRTT AGAATTSSSI SCPEPDLELL  660
AALLKNPDLV YALTSGKPSN LAGQDMVKLL DVIKTGAPTS SSSSNKQVEE KVEVSLPSPT  720
PATNPGMSGW GQEAIRNPFS RQNQVGAAVA RSGTHLHVTS MQWKSTNEQA IPRHATAAYN  780
NSVILSHTER QQQQQQQMQP QLHHNHHLQQ QPISTTSYAV REPVGQMGTA TSSGSWRSQQ  840
SQNSYYSHQG NEIALASQAS SYQGNNQQYM SSNREYESWS PDHSPSRNHP NVRGQQQQQQ  900
QQQQQPSRKY DSSSHPYWNQ NKRWR*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g005830.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226746	0.0	AK226746.1 Arabidopsis thaliana mRNA for luminidependens protein, complete cds, clone: RAFL07-75-C15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010429834.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS-like
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	D7M3G5	0.0	D7M3G5_ARALL; Uncharacterized protein
STRING	XP_010429826.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]