PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g005830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HB-other | ||||||||
Protein Properties | Length: 985aa MW: 108964 Da PI: 6.8621 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17 | 1e-05 | 107 | 163 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ + L+++F+ + +s++e +e+++ g+t +qV+ +F ++++ +k Csa02g005830.1 107 KRPRDLLNPKAAKYLQAVFAVKDAISKRESREISALFGITVAQVRDFFVTQKTRVRK 163 799*********************************************999999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.329 | 104 | 164 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.91E-5 | 106 | 166 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.9E-4 | 106 | 168 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-4 | 107 | 166 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 0.00461 | 107 | 164 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 985 aa Download sequence Send to blast |
MDEIEIGSSV ESLMELLDSQ KELFHSQIDQ LQDVVVAQCK LTGVNPLAQE MLDLVASSVN 60 LVSFGDENFA SQFNFWSRLY CNGDGSAVYK LLLPCQAAGA LSIKIGKRPR DLLNPKAAKY 120 LQAVFAVKDA ISKRESREIS ALFGITVAQV RDFFVTQKTR VRKQVRLSRE KLILPNSDAI 180 RGDGVPENNN ATNHVDPVPL NSVHPEACSI SWGEGETVTL MPPEDIPPDI SDSDKYFVEN 240 IFSLLGKEET FSGQVKLMEW IMQIQDSSVL IWFLSKGGVL ILTTWLSQAA AEEQTSVLLL 300 ILKVLCHLPL HKASPENMSA ILQSVNGLRF YRTIAEIMGD TSNPEDILSL TNGRSENVRR 360 IESSQGPKLL LTSADDSTKK HMLGSTPSCI LIIAEIMGDT SNPEDILSLT NGRSENVRRI 420 ESSQGPKLLL TSADDSTKKH MLGSTPSYNK ERRKVQMVEQ PGQKAAGKSP QTVRIGTSSR 480 SRPMSADDIQ KAKMRALYMQ SKNSKKDPLP SAIGDSKTIV PEKPLALQSS KDFPPSQNSE 540 AKTEDTNVPS VEPSAIQPVN GPAIIVPIQT DEIKKPFLTP SKSISNKVGI LVKMSPQTIL 600 KNCKRIQIDW HVPPGMELDE AWRVAAGGNS KEADVQRNRN RRERETTYQS LQNIPLNPKE 660 PWDREMDYDD SLTLEIPSLQ SPEESSTEPQ ESLDERRTTA GAATTSSSIS CPEPDLELLA 720 ALLKNPDLVY ALTSGKPSNL AGQDMVKLLD VIKTGAPTSS SSSNKQVEEK VEVSLPSPTP 780 ATNPGMSGWG QEAIRNPFSR QNQVGAAVAR SGTHLHVTSM QWKSTNEQAI PRHATAAYNN 840 SVILSHTERQ QQQQQQMQPQ LHHNHHLQQQ PISTTSYAVR EPVGQMGTAT SSGSWRSQQS 900 QNSYYSHQGN EIALASQASS YQGNNQQYMS SNREYESWSP DHSPSRNHPN VRGQQQQQQQ 960 QQQQPSRKYD SSSHPYWNQN KRWR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g005830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK226746 | 0.0 | AK226746.1 Arabidopsis thaliana mRNA for luminidependens protein, complete cds, clone: RAFL07-75-C15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010429834.1 | 0.0 | PREDICTED: homeobox protein LUMINIDEPENDENS-like | ||||
Swissprot | Q38796 | 0.0 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | D7M3G5 | 0.0 | D7M3G5_ARALL; Uncharacterized protein | ||||
STRING | XP_010429826.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10876 | 24 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 0.0 | HB-other family protein |
Publications ? help Back to Top | |||
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