PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g004860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 526aa    MW: 60183.7 Da    PI: 5.4419
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g004860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM21.75.3e-0724975128
             NAM  75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +r++ +g+Wk+ g  k++++ +g +vg+ + ++f      k +kt Wvmhey l
  Csa02g004860.1   2 SRKAGAGTWKTNGY-KDIKK-DGVKVGTMELITFR----IKKKKTGWVMHEYIL 49 
                     588899****9998.89998.999******99997....33358********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.761170IPR003441NAC domain
SuperFamilySSF1019414.97E-10270IPR003441NAC domain
PfamPF023658.3E-5348IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSRKAGAGTW KTNGYKDIKK DGVKVGTMEL ITFRIKKKKT GWVMHEYILD DHQVKQRSHQ  60
EVVLCTIKFK PGKDKTLNAY APTLEPIVIG QPQPQIQPPR GEEENQNTND VHVASAEDIQ  120
YLGAPPPRET QQGIEQHQDF GSYGQLAHQQ SHILGLVEGS NHQHHGYGYM AEYYNQPRRQ  180
EMDGSHSAHP YDPSQLPTEL QEQYILAVQH QQLRMEQHQR QIIGQATHLS SQLPVMMMNQ  240
SIEERQYGQP YHQRNDLSMV HMETQKQDNM VGHLASQLKH GEQNNVPLMT MNQTIETPQP  300
TNNLVHEHYG YGNMDEYLNQ FCRQETDPPL SAQAIGVHHR IGSSGLYSAQ HNDQNHQNVT  360
SFKEDEYDYN HLMHLFEGLP DPSQLPMELQ EEYILGDQYQ NFSMEQQQHQ INGQATHLSS  420
QFPVSMNQAI DEPYCCQPYH QSNHLSVVRM ETQQQGNEEQ DNVPLMTTNQ TIEPPKLTQE  480
QQQPCEQAST RNELTQEMDP EIASLLFGQN ITVEEATLMA TLGNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g004860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1614921e-65AL161492.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4.
GenBankCP0026871e-65CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankT15B161e-65AF104919.1 Arabidopsis thaliana BAC T15B16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466862.11e-118PREDICTED: uncharacterized protein LOC104746993
TrEMBLD7M4948e-69D7M494_ARALL; Uncharacterized protein
STRINGXP_010466871.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.22e-07NAC family protein