PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g004670.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 437aa MW: 49592 Da PI: 6.6839

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g004670.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	121.5	7.3e-38	6	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevl 93 +G+rF+Pt eel+++yLk+k+ gk+ ++e+i+e++ +++ P+ Lp +k+++++ ewyfFs+ + ++++ ++ +r+t gyWk tgkd++++ Csa02g004670.1 6 VVGYRFSPTGEELINHYLKNKILGKTWLVDEAISEINFLSYIPELLPrlAKIQSDNLEWYFFSRIEYTNPKkKNAMKRSTGCGYWKPTGKDRKIK 100 58**********************999999***********5448877777****9999972556778*************** PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k +g ++glkktLv++kg+ p+g +t Wv+hey++ Csa02g004670.1 101 DKrgNGVEIGLKKTLVYHKGKVPNGDRTPWVIHEYHI 137 9777788**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	43.056	5	155	IPR003441	NAC domain
SuperFamily	SSF101941	9.55E-41	6	155	IPR003441	NAC domain
Pfam	PF02365	8.8E-23	7	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MLKDVVVGYR FSPTGEELIN HYLKNKILGK TWLVDEAISE INFLSYIPEL LPRLAKIQSD 60 NLEWYFFSRI EYTNPKKKNA MKRSTGCGYW KPTGKDRKIK DKRGNGVEIG LKKTLVYHKG 120 KVPNGDRTPW VIHEYHITCL PQDQRNYVIC QVKYKGEDIP FGGTYSSEPS QSMVSDSNSI 180 REAINSAPKF EQPGQENIFG MSMDDLKSPT NEQEDLSLWD VLHPDMLFSD NNNPTLLPHL 240 APNDDEFLGG LRHIDRDQVE YLFANEEFIS TPTSYMQENR SDHRPKKPLS GIILDYSCDT 300 DSDAESISAT SYQGTSSPGG DRVGSSNSHS QTGFDDMISL SKALQTSHEP SISRKTRESQ 360 LKQEIKQDTS RASGAFIDKK SYMVKTEKKG WFITEEAMER NRNIPRYVYL VRMIIGFIIL 420 LALIGNIISV LTLKSD*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MLKDVVVGYR FSPTGEELIN HYLKNKILGK TWLVDEAISE INFLSYIPEL LPRLAKIQSD  60
NLEWYFFSRI EYTNPKKKNA MKRSTGCGYW KPTGKDRKIK DKRGNGVEIG LKKTLVYHKG  120
KVPNGDRTPW VIHEYHITCL PQDQRNYVIC QVKYKGEDIP FGGTYSSEPS QSMVSDSNSI  180
REAINSAPKF EQPGQENIFG MSMDDLKSPT NEQEDLSLWD VLHPDMLFSD NNNPTLLPHL  240
APNDDEFLGG LRHIDRDQVE YLFANEEFIS TPTSYMQENR SDHRPKKPLS GIILDYSCDT  300
DSDAESISAT SYQGTSSPGG DRVGSSNSHS QTGFDDMISL SKALQTSHEP SISRKTRESQ  360
LKQEIKQDTS RASGAFIDKK SYMVKTEKKG WFITEEAMER NRNIPRYVYL VRMIIGFIIL  420
LALIGNIISV LTLKSD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-20	8	137	18	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269\|PubMed:21450938}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g004670.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269\|PubMed:21450938}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010428489.1	0.0	PREDICTED: NAC domain-containing protein 69-like
Swissprot	Q9M126	0.0	NAC69_ARATH; NAC domain-containing protein 69
TrEMBL	A0A178V081	0.0	A0A178V081_ARATH; NTM2
STRING	XP_010428489.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1982	19	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	0.0	NAC domain containing protein 69

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] He L, et al. Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance. Plant Mol. Biol., 2017. 93(4-5): p. 369-387 [PMID:27975189]