PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g004650.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 529aa MW: 59933 Da PI: 5.5018

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g004650.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123	2.6e-38	6	136	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevls 94 G+rF+Pt eelv++yLk+k+ gk+ ++e+i+e++ +++ P+ Lp +k+++++ ew+fFs+ + ++++ ++ +r+t gyWkatgkd+++++ Csa02g004650.1 6 IGYRFSPTGEELVSYYLKNKILGKTWLVDEAISEINFLSYIPELLPrlAKIQSDNLEWFFFSRIEYTNSKkKNAMKRSTGCGYWKATGKDRKIKD 100 69*********************999999***********5448877777***99888762556788************** PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +g ++glkktLv++kg+ p+g +t Wvmhey++ Csa02g004650.1 101 KrgNGVEIGLKKTLVYHKGKVPNGDRTPWVMHEYHI 136 9777788*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.634	4	171	IPR003441	NAC domain
SuperFamily	SSF101941	1.02E-39	5	171	IPR003441	NAC domain
Pfam	PF02365	1.4E-23	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MVRDLIGYRF SPTGEELVSY YLKNKILGKT WLVDEAISEI NFLSYIPELL PRLAKIQSDN 60 LEWFFFSRIE YTNSKKKNAM KRSTGCGYWK ATGKDRKIKD KRGNGVEIGL KKTLVYHKGK 120 VPNGDRTPWV MHEYHITCLP HHQVLQIFRA SFFFFYGYVL RNYVICQVKY KGEAKDISYG 180 ENYLTEQSHS LVSDSNTARA LEPALQVEQL GGENLFGMSV DDLRSPMNEQ EWDGFFNPNT 240 LLSDDNMFNP YLQPQSPHLA SNDDEFLGGL RHVDRRQVEY LFADEEDSLS GPTLSMTENH 300 NDHMPLSEII VDYSSDSNHD ADAISATSYH GASSTGDDTV GSLNRHILQT SGDEILSSTT 360 NSCNDIQTYG KPSISRSTWL SQLTRRVIRL KQKVKQDTLR TVDSDEDSDT DAESISVTSY 420 QGTPGDDSVG SSTRYFSSCS STDSCEDLQP SADLSNGRET REYKLAQRTV PSKQEVKQGT 480 PRAIDESIMK TEKKGWFVIE EVLDIIHKTL WYIYPMRLIT SVLLTVKA*

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MVRDLIGYRF SPTGEELVSY YLKNKILGKT WLVDEAISEI NFLSYIPELL PRLAKIQSDN  60
LEWFFFSRIE YTNSKKKNAM KRSTGCGYWK ATGKDRKIKD KRGNGVEIGL KKTLVYHKGK  120
VPNGDRTPWV MHEYHITCLP HHQVLQIFRA SFFFFYGYVL RNYVICQVKY KGEAKDISYG  180
ENYLTEQSHS LVSDSNTARA LEPALQVEQL GGENLFGMSV DDLRSPMNEQ EWDGFFNPNT  240
LLSDDNMFNP YLQPQSPHLA SNDDEFLGGL RHVDRRQVEY LFADEEDSLS GPTLSMTENH  300
NDHMPLSEII VDYSSDSNHD ADAISATSYH GASSTGDDTV GSLNRHILQT SGDEILSSTT  360
NSCNDIQTYG KPSISRSTWL SQLTRRVIRL KQKVKQDTLR TVDSDEDSDT DAESISVTSY  420
QGTPGDDSVG SSTRYFSSCS STDSCEDLQP SADLSNGRET REYKLAQRTV PSKQEVKQGT  480
PRAIDESIMK TEKKGWFVIE EVLDIIHKTL WYIYPMRLIT SVLLTVKA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-21	7	136	18	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269\|PubMed:21450938}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g004650.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269\|PubMed:21450938}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010428417.1	0.0	PREDICTED: NAC domain-containing protein 69-like isoform X1
Swissprot	Q9M126	1e-177	NAC69_ARATH; NAC domain-containing protein 69
TrEMBL	A0A178V081	1e-175	A0A178V081_ARATH; NTM2
STRING	XP_010428417.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1982	19	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	1e-177	NAC domain containing protein 69

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] He L, et al. Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance. Plant Mol. Biol., 2017. 93(4-5): p. 369-387 [PMID:27975189]