PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa02g001600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 65aa MW: 7253.97 Da PI: 5.8046 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.5 | 1.5e-08 | 38 | 65 | 1 | 27 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktI 27 +g WT eEdell +avk++ g+ +Wk I Csa02g001600.1 38 KGGWTSEEDELLTNAVKMYKGHtSWKNI 65 688*****************9999*987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.828 | 33 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.73E-5 | 34 | 65 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.6E-7 | 35 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.0E-6 | 38 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-4 | 41 | 65 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 65 aa Download sequence Send to blast |
MTTESNDLNR SESESDISAI DFSLGCKRVS GPTRRSTKGG WTSEEDELLT NAVKMYKGHT 60 SWKNI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa02g001600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010427153.1 | 3e-38 | PREDICTED: myb-related protein B-like isoform X1 | ||||
Swissprot | Q9SPN3 | 1e-16 | MB3R2_ARATH; Transcription factor MYB3R-2 | ||||
TrEMBL | R0FHY7 | 1e-16 | R0FHY7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010427153.1 | 1e-37 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00540.2 | 1e-20 | myb domain protein 3r2 |
Publications ? help Back to Top | |||
---|---|---|---|
|