PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g001510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 683aa    MW: 78151.9 Da    PI: 7.5708
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g001510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.15e-063413781355
                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     R++ N++f+ Lr+++P+ +       ++K +iL  +++Y+++L+
  Csa02g001510.1 341 RRKENEKFSVLRTMVPTvN------EVDKESILNNTIKYLQELE 378
                     6777*************65......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-3824200IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.211328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.38E-5341382No hitNo description
Gene3DG3DSA:4.10.280.107.3E-9341387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-8341392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF495623.9E-11517629IPR000008C2 domain
PfamPF001681.1E-7517596IPR000008C2 domain
Gene3DG3DSA:2.60.40.1503.6E-10518629IPR000008C2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MSLTMADGGV EAVGGRSKRQ NSLLRKQLAL AVRSVQWNYA IFWSSSLTQP GVLEWGEGCY  60
NGDMKKRKKS YESHYKHGLQ RSKQLRKLYL SMLEGDSGTT VSTTHNEHND DDVHSCDDST  120
TDMMLSPDDL SDEECLPGRA SATGETIWLC NAQYAENKLF SRSLLARTVV CFPHLGGVIE  180
LGVTELISED HSLLQHIKSC LLEISVHQNN DDEKKMGIMI SEANLMLEEK HQIPLEISDE  240
DLHYKRTIST VLNYSVDRSS TNDKTIRRRQ PNLASSDSGS SFLRWKQCEQ PNSDVVQKQS  300
DLQPQSQNVL RKMLYNVPLM HTKRMSSPHR PGMNQDDPSD RRKENEKFSV LRTMVPTVNE  360
VDKESILNNT IKYLQELEAR VEELESCMGS VNFVERQRRT TDNLNDSVLI EETSGNYDDS  420
TKIDENSGET EQVTVFRDKT HLRVKLIETE VVIEARCSYR DYIVADIMET LSNLHMDAFS  480
VRSHTLNKFL TLNLKAKFRG AAVASIGMIK RELRRVIGSP VYYVLLQCGT KEYRSKMSKG  540
DNDNALWNQK FVFDFPMSQW KKLTHIKFRI MDKELFKDGG FVGETMIHLG GIVTEGRDRG  600
CMETKPAPYN VVLDDNTFKG QLKIGLRFIA TDKSQRKAWE VKMEAKNREE PISPILNLMK  660
LPLLRFLLYC FRKTNKYQLK EN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16468KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g001510.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936640.0AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427067.10.0PREDICTED: transcription factor MYC1-like
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLM4F8D10.0M4F8D1_BRARP; Uncharacterized protein
STRINGXP_010427067.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein