PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa02g001230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 204aa MW: 22369.5 Da PI: 9.7741 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 234.1 | 3.3e-72 | 6 | 162 | 23 | 170 |
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee......lleelkveeenlksnvekeesastsvssekl...senedee 108 vsvP +slfk+vtvrCGhC++llsv++++++ ll+++s++++s+ ++ llee+++ ++n+++n++++++ +++++e+l +n +e Csa02g001230.1 6 QVSVPPSSLFKTVTVRCGHCSNLLSVTVNMRTLLLPSVSNIGHSFIPPpppppnLLEEMRSGGQNINMNMMMSHHGAAHHPNESLamaARNGLQE 100 59*******************************************999999999****************************99977788999** PP YABBY 109 vprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +pr+pp++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl Csa02g001230.1 101 MPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 162 ************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.5E-55 | 6 | 162 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.02E-8 | 107 | 155 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 6.8E-5 | 110 | 156 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence Send to blast |
MCDCRQVSVP PSSLFKTVTV RCGHCSNLLS VTVNMRTLLL PSVSNIGHSF IPPPPPPPNL 60 LEEMRSGGQN INMNMMMSHH GAAHHPNESL AMAARNGLQE MPRPPPANRP PEKRQRVPSA 120 YNRFIKEEIQ RIKAGNPDIS HREAFSAAAK NWAHFPHIHF GLMADHPPTK KANVRQQQEG 180 EDGMMGSREG FYGSAANVGV TNN* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10457020, PubMed:12417699, PubMed:19837869). Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity (PubMed:10457020, PubMed:12417699). {ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa02g001230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK316696 | 0.0 | AK316696.1 Arabidopsis thaliana AT4G00180 mRNA, complete cds, clone: RAFL06-81-K07. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010426672.1 | 1e-150 | PREDICTED: axial regulator YABBY 3-like isoform X2 | ||||
Swissprot | Q9XFB1 | 1e-112 | YAB3_ARATH; Axial regulator YABBY 3 | ||||
TrEMBL | D7M5S0 | 1e-116 | D7M5S0_ARALL; Uncharacterized protein | ||||
STRING | XP_010426665.1 | 1e-133 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2217 | 28 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00180.2 | 1e-118 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|