PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g001100.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 589aa MW: 63213.8 Da PI: 7.3563

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g001100.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.4	1.6e-15	406	451	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq Csa02g001100.1 406 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 451 9**********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-18	399	463	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.815	401	450	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-18	406	460	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.63E-16	406	455	No hit	No description
Pfam	PF00010	4.3E-13	406	451	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-18	407	456	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0009506	Cellular Component	plasmodesma
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence Send to blast
MSQCVPNCHI DDTPAAAAGT TTVRSTTAAD IPMLDYEVAE LTWENGQLGL HGLGPPRVTA 60 SSTKYSTGAG GTLESIVDQA TRLPNPKPTD ELVPWFHHRS SRAAMAMDAL VPCSNLQEQQ 120 SKPGGVGSTR VGSCSDGRTM AGGKRARVAP EWSGSGSQRL TMDTYDVGFT STSMGSPDNT 180 IDDHDSVCHS RPQANGGRRR EERRRQIXAA AAGTTTVRST TAADIPMLDY EVAELTWENG 240 QLGLHGLGPP RVTASSTKYS TGAGGTLESI VDQATRLPNP KPTDELVPWF HHRSSRAAMA 300 MDALVPCSNL QEQQSKPGGV GSTRVGSCSD GRTMAGGKRA RVAPEWSGSG SQRLTMDTYD 360 VGFTSTSMGS PDNTIDDHDS MEDEEEKKGG GKSSVSTKRS RAAAIHNQSE RKRRDKINQR 420 MKTLQKLVPN SSKTDKASML DEVIEYLKQL QAQVSMMSRM NMPSMMLPMA LQQQQQLQMS 480 LMSNPMGLGI GMGMPGLGLL DLNSMNRAAS PAATPNIHAN MMPNPFVPMT SPSWDASSND 540 TRFQSPLIPD PMAAFLACSS QPTTMEAYSR MAALYQQMQH QLPPSNPK*

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence Send to blast

MSQCVPNCHI DDTPAAAAGT TTVRSTTAAD IPMLDYEVAE LTWENGQLGL HGLGPPRVTA  60
SSTKYSTGAG GTLESIVDQA TRLPNPKPTD ELVPWFHHRS SRAAMAMDAL VPCSNLQEQQ  120
SKPGGVGSTR VGSCSDGRTM AGGKRARVAP EWSGSGSQRL TMDTYDVGFT STSMGSPDNT  180
IDDHDSVCHS RPQANGGRRR EERRRQIXAA AAGTTTVRST TAADIPMLDY EVAELTWENG  240
QLGLHGLGPP RVTASSTKYS TGAGGTLESI VDQATRLPNP KPTDELVPWF HHRSSRAAMA  300
MDALVPCSNL QEQQSKPGGV GSTRVGSCSD GRTMAGGKRA RVAPEWSGSG SQRLTMDTYD  360
VGFTSTSMGS PDNTIDDHDS MEDEEEKKGG GKSSVSTKRS RAAAIHNQSE RKRRDKINQR  420
MKTLQKLVPN SSKTDKASML DEVIEYLKQL QAQVSMMSRM NMPSMMLPMA LQQQQQLQMS  480
LMSNPMGLGI GMGMPGLGLL DLNSMNRAAS PAATPNIHAN MMPNPFVPMT SPSWDASSND  540
TRFQSPLIPD PMAAFLACSS QPTTMEAYSR MAALYQQMQH QLPPSNPK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	409	414	ERKRRD
2	410	415	RKRRDK

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00034	PBM	Transfer from AT4G00050	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g001100.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117229	0.0	AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08.
GenBank	BT025971	0.0	BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010426522.1	0.0	PREDICTED: transcription factor UNE10-like
Swissprot	Q8GZ38	0.0	UNE10_ARATH; Transcription factor UNE10
TrEMBL	D7M5T4	0.0	D7M5T4_ARALL; Uncharacterized protein
STRING	XP_010426522.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3919	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]