PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g001040.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 176aa MW: 19699.1 Da PI: 9.9954

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g001040.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.1	2.5e-19	57	106	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr+++ +g+++AeIrdp++ng +r +lg++ t eeAa a+++a+ k++g Csa02g001040.1 57 YKGVRRRP-WGKYAAEIRDPNKNG--ARMWLGTYETSEEAAVAYDRAAFKMRG 106 9*****.*******8887..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.28E-29	55	116	No hit	No description
Pfam	PF00847	5.8E-14	56	106	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.9E-32	56	115	IPR001471	AP2/ERF domain
SMART	SM00380	2.3E-37	56	120	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.065	56	114	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.77E-23	56	115	IPR016177	DNA-binding domain
PRINTS	PR00367	2.6E-13	57	68	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.6E-13	96	116	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MEAELTRDNG SAVLDWIRRQ LLEEDDFDLT ASRSPSEEDS SSSTSSSSEP PRRGANYKGV 60 RRRPWGKYAA EIRDPNKNGA RMWLGTYETS EEAAVAYDRA AFKMRGSKAK LNFPHLIGID 120 QAEPVRVNHA GHKRQRSLEP ISQAAKRRNI INLTATLLPS LRLDLELSVL QKHLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-30	53	114	2	63	ATERF1
3gcc_A	1e-30	53	114	2	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:11950980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g001040.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269\|PubMed:11950980, ECO:0000269\|PubMed:12068110}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010426455.1	1e-126	PREDICTED: ethylene-responsive transcription factor 13-like
Swissprot	Q8L9K1	2e-42	ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBL	D7M6C0	6e-90	D7M6C0_ARALL; Uncharacterized protein
STRING	XP_010426455.1	1e-125	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	1e-41	ethylene-responsive element binding factor 13

Publications ? help Back to Top
Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum. Plant Physiol., 2007. 145(4): p. 1588-99 [PMID:17965181] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]