PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02164s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 178aa MW: 19029.3 Da PI: 9.8477 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.2 | 3.1e-13 | 78 | 122 | 53 | 99 |
EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 r +++r++lt+GW++Fv+ ++L +gD+vvF+ ++s e++++v+r+ Csa02164s010.1 78 RTTPRRHLLTTGWSKFVNNKKLIAGDSVVFM--RKSADEMFIGVRRA 122 678899*************************..44788899***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-10 | 78 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-12 | 78 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.5E-10 | 78 | 122 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.995 | 83 | 123 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
NSSQPPRFLT RYIGLVPSVS CDTPSNVAAL FASFSMTVTD QPSMADNYQF DLGGSDAKAT 60 PVVDCLRHLS TVSSSSSRTT PRRHLLTTGW SKFVNNKKLI AGDSVVFMRK SADEMFIGVR 120 RAPISSNIGG TSFYGGDEYC SYYQSSGGVA KEDDGSAKKG FRRTGKGKLT AEATALR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02164s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007143 | 1e-163 | AC007143.5 Arabidopsis thaliana chromosome 2 BAC T17H1 genomic sequence, complete sequence. | |||
GenBank | AC007730 | 1e-163 | AC007730.3 Arabidopsis thaliana chromosome 2 BAC T5M2 genomic sequence, complete sequence. | |||
GenBank | AK230014 | 1e-163 | AK230014.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-53-A06. | |||
GenBank | CP002685 | 1e-163 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. | |||
GenBank | JF729200 | 1e-163 | JF729200.1 Arabidopsis thaliana ecotype C24 mitochondrion, complete genome. | |||
GenBank | JF729201 | 1e-163 | JF729201.1 Arabidopsis thaliana ecotype Col-0 mitochondrion, complete genome. | |||
GenBank | JF729202 | 1e-163 | JF729202.1 Arabidopsis thaliana ecotype Landsberg erecta mitochondrion, complete genome. | |||
GenBank | Y08501 | 1e-163 | Y08501.2 Arabidopsis thaliana mitochondrial genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006302016.2 | 2e-45 | auxin response factor 17 | ||||
Swissprot | Q84WU6 | 6e-37 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | A0A178U5R5 | 1e-105 | A0A178U5R5_ARATH; Auxin response factor | ||||
STRING | Cagra.24523s0002.1.p | 1e-65 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 9e-32 | auxin response factor 17 |