PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g043960.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 815aa MW: 93982.6 Da PI: 7.2403

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g043960.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	62.5	8.1e-20	672	711	1	40
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkg 40 k r+rWtpeLHe Fv+av+qLGG e+AtPk++l++m+v+g Csa01g043960.1 672 KRRMRWTPELHEVFVDAVNQLGGGENATPKNVLKHMNVEG 711 68************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-16	670	711	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.66E-8	671	711	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-13	672	711	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-5	674	708	IPR001005	SANT/Myb domain
Pfam	PF14379	5.5E-21	733	777	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence Send to blast
MERRSLRPPV PSDISDTCSL IPSFQNPSAD MSFYPQHNQL MATPYHLLSA NDGSVGHIYS 60 TSDLSANDGV LDHMYSSDFH NSESSVWIPS PLPDPFDFPS PSPIQRSQMD DGEDFTADEK 120 LNLAQSLLEG EALLWFQRRT RVWGYFDSWG MMESALVLRF GDRDERIRLF QELREEKQIE 180 ILEQKKESKK EVDLCLGKIT SQPSDVTQSH DALNWNCNMN TGVTLISPRF IDYDSEKLQN 240 DDLREVEASS VLVNLDNVVK NVNHEKKKAI HNRESNQLES IPQVSHQLVE LSHLQVSIST 300 LEPSRSVHQL GFSGMDSALA NRKLGEKHVE NPIFEALNEV AWIFTEESPK SQEVDVMLKN 360 TDLSLFFDGN GAAQFQIVYG SEMDPYGYQV FDQMFLRGYN LLQHKKMSKF PKSWMFKFKN 420 SLEAQNSAPE QLLFLDIVAD AKGTRDGLHK QCTLCDSHEL QMQQQRKCSK FWTFKYNNKG 480 LRGEKILMKQ NQSNHRGKIK FEHIKHACWL IQCRKHSCYL SMLLQRFQFV VMDFSKFWRF 540 RFKGQILEIF IVVFERKKLQ KFSLQLWMTC NFTVKLWCGR SICVQQLYYG RRQNREHGLI 600 VLKSLIKRYN VVWWSQIGKV QQPSTPSQIQ QPQVGLQQPS PCLDLRPLVR TVSSNSNNNN 660 SSSNTNHNAA AKRRMRWTPE LHEVFVDAVN QLGGGENATP KNVLKHMNVE GSPETKLGPL 720 EQITSVDTKR GIDVTEALRL QMEVQKQLHE QLEIQREMQI RIEEQGKVLS MMFEKQNIGF 780 GKLEQEEKTS AEKPENGSEE SSDSPRAKRR RNEE*

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence Send to blast

MERRSLRPPV PSDISDTCSL IPSFQNPSAD MSFYPQHNQL MATPYHLLSA NDGSVGHIYS  60
TSDLSANDGV LDHMYSSDFH NSESSVWIPS PLPDPFDFPS PSPIQRSQMD DGEDFTADEK  120
LNLAQSLLEG EALLWFQRRT RVWGYFDSWG MMESALVLRF GDRDERIRLF QELREEKQIE  180
ILEQKKESKK EVDLCLGKIT SQPSDVTQSH DALNWNCNMN TGVTLISPRF IDYDSEKLQN  240
DDLREVEASS VLVNLDNVVK NVNHEKKKAI HNRESNQLES IPQVSHQLVE LSHLQVSIST  300
LEPSRSVHQL GFSGMDSALA NRKLGEKHVE NPIFEALNEV AWIFTEESPK SQEVDVMLKN  360
TDLSLFFDGN GAAQFQIVYG SEMDPYGYQV FDQMFLRGYN LLQHKKMSKF PKSWMFKFKN  420
SLEAQNSAPE QLLFLDIVAD AKGTRDGLHK QCTLCDSHEL QMQQQRKCSK FWTFKYNNKG  480
LRGEKILMKQ NQSNHRGKIK FEHIKHACWL IQCRKHSCYL SMLLQRFQFV VMDFSKFWRF  540
RFKGQILEIF IVVFERKKLQ KFSLQLWMTC NFTVKLWCGR SICVQQLYYG RRQNREHGLI  600
VLKSLIKRYN VVWWSQIGKV QQPSTPSQIQ QPQVGLQQPS PCLDLRPLVR TVSSNSNNNN  660
SSSNTNHNAA AKRRMRWTPE LHEVFVDAVN QLGGGENATP KNVLKHMNVE GSPETKLGPL  720
EQITSVDTKR GIDVTEALRL QMEVQKQLHE QLEIQREMQI RIEEQGKVLS MMFEKQNIGF  780
GKLEQEEKTS AEKPENGSEE SSDSPRAKRR RNEE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g043960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_010455315.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20400.1	5e-53	G2-like family protein