PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa01g041250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 211aa MW: 23373.7 Da PI: 7.038 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 104.1 | 2.4e-32 | 61 | 123 | 2 | 64 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaa 64 rs t+sCqdCGnqakk+C+h RCRtCCks+g+dC thv+stW+p+akrrerqqq ++++s+ Csa01g041250.1 61 RSLTISCQDCGNQAKKGCTHGRCRTCCKSHGLDCPTHVRSTWIPIAKRRERQQQIQTPTSNPI 123 57789**************************************************99988765 PP | |||||||
2 | DUF702 | 79.8 | 7.4e-25 | 131 | 195 | 90 | 154 |
DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++ +++e+ +++P+ev s+a+frcvr+s+ ddg+ e+aYqt+v i+Gh fkGiLy+qG+++ Csa01g041250.1 131 NIPNTLNSSEMGDATFPDEVTSDALFRCVRMSGTDDGDCEYAYQTTVGIAGHQFKGILYNQGPDK 195 677888888999999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.0E-50 | 64 | 194 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.5E-26 | 66 | 108 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 6.4E-27 | 146 | 193 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MAGIGSSRNN EEDNQQKANW VWYRNTNNPS TSHHTNQIWQ QPSLDLYPGQ INVCDLTTSS 60 RSLTISCQDC GNQAKKGCTH GRCRTCCKSH GLDCPTHVRS TWIPIAKRRE RQQQIQTPTS 120 NPITGGDRVE NIPNTLNSSE MGDATFPDEV TSDALFRCVR MSGTDDGDCE YAYQTTVGIA 180 GHQFKGILYN QGPDKTITPG TQFYENPPRS * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa01g041250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC007212 | 1e-126 | AC007212.7 Arabidopsis thaliana chromosome 2 clone F8D23 map PhyB, complete sequence. | |||
GenBank | CP002685 | 1e-126 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010413933.2 | 1e-158 | PREDICTED: protein SHI RELATED SEQUENCE 4-like | ||||
Swissprot | Q9SI19 | 1e-121 | SRS4_ARATH; Protein SHI RELATED SEQUENCE 4 | ||||
TrEMBL | A0A178VX85 | 1e-121 | A0A178VX85_ARATH; SRS4 | ||||
STRING | XP_010413933.1 | 1e-157 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15117 | 15 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G18120.1 | 1e-118 | SHI-related sequence 4 |