PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g035170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 301aa MW: 35085.7 Da PI: 8.9585 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.5 | 6.3e-12 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +en+ r+ + k r g++KK +EL +LCd+ +++i+fs++ Csa01g035170.1 11 VENEKSREEKLKKKRVGLMKKVKELMILCDVMACIIMFSPK 51 6899999999*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-13 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.647 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.24E-21 | 4 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-17 | 4 | 93 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-11 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-5 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MAIKKLKLAW VENEKSREEK LKKKRVGLMK KVKELMILCD VMACIIMFSP KEVEPMVWPS 60 VEKAHGLLEI FFSLPEIKNK KKEMNLESYL KEKKEKVHEQ FLKSNKKHMG YVIDQLMVQL 120 HRGRRIDDLD LSEIFALISF SRDDIILRRK ELKFVQYSPL RYPPILPFEA HFKEPRNTRY 180 DERSWKTDEE TKIISIDPLT PKPRNDQEIR MGMISHNKNH DHVLYQGNNS NENPDLDIAP 240 VGSPMLTFHG FDGPISQQLK DHAMLDNPTM SMRQPRQHLS DFMSHEFGVN GGSTVSIDDS 300 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g035170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019087925.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | V4NQI0 | 1e-96 | V4NQI0_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.18351s0040.1.p | 1e-141 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4724 | 14 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 1e-75 | AGAMOUS-like 48 |