PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g035150.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 304aa    MW: 34721.9 Da    PI: 10.622
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g035150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.64.2e-2219113199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk+  + dv ++++  lp +f+++++  ke s ++++++++grsWev +  +k+++  ++ ++GW++Fvk+n L + +f++F+++g+++f  +v
  Csa01g035150.1  19 FFKAVQSIDVASENMRALPHDFVRSFSD-KELSCKMKIRTQWGRSWEVAI--SKNPRFyFMEKSGWEKFVKDNALGQSEFLTFTHNGNMSF--TV 108
                     89999******************99965.57899****************..******555569***********************9999..99 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     ++f++
  Csa01g035150.1 109 SIFKQ 113
                     99975 PP
2B338.81.7e-122272961690
                     EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     l +p +fa++h+++  e+ + ++ +++g +sW+v +    + ++  +++GW++ vk+  L+ gD++ F+l++ +e 
  Csa01g035150.1 227 LKIPGSFAKDHMSE--EKAMFKIHHPDGkKSWNVVY--LVRFRA--FSGGWRSLVKDYPLDIGDTCKFTLIKPNEL 296
                     78*********866..45689999*99999******..444444..89*********************9985444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-2014115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-1914119IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-1819112No hitNo description
PfamPF023625.8E-2019113IPR003340B3 DNA binding domain
PROSITE profilePS5086314.4819114IPR003340B3 DNA binding domain
SMARTSM010198.4E-2419114IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-15208301IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.278212303IPR003340B3 DNA binding domain
SMARTSM010191.4E-15215303IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-12216301IPR015300DNA-binding pseudobarrel domain
CDDcd100178.27E-11226301No hitNo description
PfamPF023628.1E-10227297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAGNADYLRC LQERKNEGFF KAVQSIDVAS ENMRALPHDF VRSFSDKELS CKMKIRTQWG  60
RSWEVAISKN PRFYFMEKSG WEKFVKDNAL GQSEFLTFTH NGNMSFTVSI FKQDGKEILQ  120
PSQSRASLAS SSRIKTEQRR GSVYNDVKKN KVVSPELRDR VPTREAESNG GEKYKRKLSF  180
GKKKAEKTQN SKRTEKVVRA RRDSAGASSS SVAEFTILFK KAYLIFLKIP GSFAKDHMSE  240
EKAMFKIHHP DGKKSWNVVY LVRFRAFSGG WRSLVKDYPL DIGDTCKFTL IKPNELLLVV  300
VKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g035150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467314.10.0PREDICTED: B3 domain-containing protein At2g16210-like
SwissprotQ5BPT71e-138Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLR0G9A50.0R0G9A5_9BRAS; Uncharacterized protein
STRINGXP_010517310.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.11e-129B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]