PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g034660.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 485aa    MW: 54263.7 Da    PI: 7.1989
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g034660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.3e-093073441954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Csa01g034660.1 307 FEHflHPYPKDSDKIMLARQTGLSRSQVSNWFINARVR 344
                     554458******************************88 PP
2BELL1276.8e-41169240172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqelq+k +kLls+l+eVd++Ykqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi
  Csa01g034660.1 169 ERQELQSKLSKLLSILDEVDRKYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQI 240
                     79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-68111238IPR006563POX domain
PfamPF075261.5E-45117237IPR006563POX domain
PROSITE profilePS5007111.823285348IPR001356Homeobox domain
CDDcd000861.07E-11288349No hitNo description
SMARTSM003891.0E-9288352IPR001356Homeobox domain
SuperFamilySSF466892.57E-17289355IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-27291354IPR009057Homeodomain-like
PfamPF059201.8E-18305344IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MATYYRSGSS EIYSRPEYVP GNATIYTNSF SETFPRESTN NDVSPSKEIQ ALSSFGGASQ  60
MVEVQDSGSW RDQEDNDRSC FPVMMRLGLS SQIETSRSKN NNNAYATRVV PGLTRTIHNS  120
KYLKAAQQLL DEAVNVKKAL KQFQPEGDKI GEEKEKILQT NIAEIPQAER QELQSKLSKL  180
LSILDEVDRK YKQYYHQMQI VVSSFDVIAG CGAAKPYTAL ALQTISRHFR CLRDAISGQI  240
LVVRKSLGGE HDGSEGRGVG ISRLRNVDQQ VRQQRALQRL GVMQPHTWRP QRGLPDSSVL  300
VLRAWLFEHF LHPYPKDSDK IMLARQTGLS RSQVSNWFIN ARVRLWKPMV EEMYKEEFTE  360
ALEENDPNLS SENTPEITEI QEHQTESSSN NGHASGVASS SMGQSTVARG ADRFMMVTDM  420
TRKGSGGMSL TLGIQNSDAR GDVPMSGGID NYENNISGTD FQYLNSHNHQ HRLGSSKLLH  480
DFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-15294352563Homeobox protein Meis2
3k2a_B7e-15294352563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g034660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0567960.0AY056796.1 Arabidopsis thaliana At2g16400/F16F14.10 mRNA, complete cds.
GenBankBT0006090.0BT000609.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g16400/F16F14.10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516766.10.0PREDICTED: BEL1-like homeodomain protein 7
SwissprotQ9SIW10.0BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLR0G4L10.0R0G4L1_9BRAS; Uncharacterized protein
STRINGXP_010516766.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.10.0BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]