PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g032730.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 923aa MW: 102067 Da PI: 4.8689

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g032730.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.2	3.4e-28	617	667	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Csa01g032730.1 617 EKTIGLEVLRQHFAGSLKDAAKSIGVCPTTLKRICRQHGIMRWPSRKIKKV 667 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.086	606	687	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-25	620	667	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.13E-23	814	909	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.8E-23	822	904	No hit	No description
PROSITE profile	PS51745	23.273	824	907	IPR000270	PB1 domain
SMART	SM00666	1.2E-24	824	907	IPR000270	PB1 domain
CDD	cd06407	1.86E-40	825	906	No hit	No description
Pfam	PF00564	1.5E-15	825	906	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence Send to blast
MEDDGGGDGG EGNGGFSPNS SFGAFPDAAM DLDFMDELLF DGCWLQTTDS KNLNQAEQSG 60 SASTAMNDNS TFLCFGENPS QDNEETENNE SMNQESFNQA EKFLLEEAEL GKGWWIAPRA 120 SEGPSSSVKE RLLQAISGLN ETVQDKDFLV QIWVPVQQEG KSFLTTWAQP HLFNQEYSSL 180 AEYRHVSETY NFPADEGMND YVGLPGRVFL QKLPEWTPDV RFFRRDEYPR IKEARKCDVR 240 GSLALPVFER GSGICLGVVE IVTTTQKMNY RQELEKMCKA LEAVDLRSSS NLNTPSSEFL 300 QVYSDFYCAA LPEIKDFLAT VCRSYDLPLA LSWAPCAPQG KRGSRHSDEN FSQCVSTTDS 360 ACSVPDEQSK SFWEACSEHH LLQGEGIVGK AFKATKLFFV PEVTTFSKTN YPLAHHAKIS 420 GLHAALAVPL KSKSGLVEFV LEFFFPKACL NTEAQQEMLR SLSVTLQQDF RSSNLVIDKD 480 LELEVVLPVR ETMLFSENPV SGAETAETLT GIQMQESSWI SHMIKANEKG KDVSLSWEYQ 540 KEDPKELSSG RENHQLDPSP NNVPLEAEQF QQASTSGLRV DSGPSTETPS TGGKNMLGSR 600 RPGESRRSGE KRRTKTEKTI GLEVLRQHFA GSLKDAAKSI GVCPTTLKRI CRQHGIMRWP 660 SRKIKKVGHS LKKLQLVMDS VQGAQGTIQL DSFYTSFPEL NSPNMSSNGP SLKSNEQSSH 720 LNAQTENGIM AEENTAPRSP SSPCTKSSGS SNNNENTANI LVSEDADAAL NRAHSEVELH 780 QVNQEETDCP GRTQSHKTLK EPRVLENSPS LPGSSNKSLR AGGAIKVKAT FGEARIRFTL 840 LPSCGFRELQ QEIARRFNVD DVSWFDLKYL DDDKEWVLLT CEADLDECID IYRLTQTQTI 900 KISLNEASQV KLGGSFGSAG PS*

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence Send to blast

MEDDGGGDGG EGNGGFSPNS SFGAFPDAAM DLDFMDELLF DGCWLQTTDS KNLNQAEQSG  60
SASTAMNDNS TFLCFGENPS QDNEETENNE SMNQESFNQA EKFLLEEAEL GKGWWIAPRA  120
SEGPSSSVKE RLLQAISGLN ETVQDKDFLV QIWVPVQQEG KSFLTTWAQP HLFNQEYSSL  180
AEYRHVSETY NFPADEGMND YVGLPGRVFL QKLPEWTPDV RFFRRDEYPR IKEARKCDVR  240
GSLALPVFER GSGICLGVVE IVTTTQKMNY RQELEKMCKA LEAVDLRSSS NLNTPSSEFL  300
QVYSDFYCAA LPEIKDFLAT VCRSYDLPLA LSWAPCAPQG KRGSRHSDEN FSQCVSTTDS  360
ACSVPDEQSK SFWEACSEHH LLQGEGIVGK AFKATKLFFV PEVTTFSKTN YPLAHHAKIS  420
GLHAALAVPL KSKSGLVEFV LEFFFPKACL NTEAQQEMLR SLSVTLQQDF RSSNLVIDKD  480
LELEVVLPVR ETMLFSENPV SGAETAETLT GIQMQESSWI SHMIKANEKG KDVSLSWEYQ  540
KEDPKELSSG RENHQLDPSP NNVPLEAEQF QQASTSGLRV DSGPSTETPS TGGKNMLGSR  600
RPGESRRSGE KRRTKTEKTI GLEVLRQHFA GSLKDAAKSI GVCPTTLKRI CRQHGIMRWP  660
SRKIKKVGHS LKKLQLVMDS VQGAQGTIQL DSFYTSFPEL NSPNMSSNGP SLKSNEQSSH  720
LNAQTENGIM AEENTAPRSP SSPCTKSSGS SNNNENTANI LVSEDADAAL NRAHSEVELH  780
QVNQEETDCP GRTQSHKTLK EPRVLENSPS LPGSSNKSLR AGGAIKVKAT FGEARIRFTL  840
LPSCGFRELQ QEIARRFNVD DVSWFDLKYL DDDKEWVLLT CEADLDECID IYRLTQTQTI  900
KISLNEASQV KLGGSFGSAG PS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g032730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY090943	0.0	AY090943.1 Arabidopsis thaliana At2g17150 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010515531.1	0.0	PREDICTED: protein NLP1
Refseq	XP_010515539.1	0.0	PREDICTED: protein NLP1
Refseq	XP_010515548.1	0.0	PREDICTED: protein NLP1
Refseq	XP_010515562.1	0.0	PREDICTED: protein NLP1
Refseq	XP_019083798.1	0.0	PREDICTED: protein NLP1
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	R0G2Z6	0.0	R0G2Z6_9BRAS; Uncharacterized protein
STRING	XP_010515531.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]