PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g032000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 327aa    MW: 36597.4 Da    PI: 4.0451
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g032000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.23.8e-071349339
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    i  k  r v fskR +g+   A E++   da++a++ 
  Csa01g032000.1 13 IGKKDSRAVAFSKRTKGLYSEAAEICLHADAQIAILA 49
                    667889****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.054348IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-4366IPR002100Transcription factor, MADS-box
CDDcd002662.35E-16581No hitNo description
SuperFamilySSF554551.12E-11578IPR002100Transcription factor, MADS-box
PfamPF003192.2E-71354IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGGVKRKIPI EMIGKKDSRA VAFSKRTKGL YSEAAEICLH ADAQIAILAT PVSSNSNVSF  60
YSFGHSSVDN VVAAFLANKR PREDLGLGLG FWWEDERLAK SEDPEELRDA MNSMSKMLQY  120
LKELRRDCED VEKKGLVDKT HQNHTLNPES CCDNKNNYAL LGNVEDGCNQ ELLDIDQIIN  180
FESTSSSVNS ELENISMVTP NQNSFSDSKA IVDEELVVHT DLYDDIIHLS NLDEDVMLPI  240
SDNNNNNNNN NVLSENFDEF IQELDLDQIF DFETNYMQSL EMDGVSMVTT NSETVGHGGL  300
LTHIDLDEDN LCFSDYFNEL TSPDPI*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g032000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514729.10.0PREDICTED: agamous-like MADS-box protein AGL97
RefseqXP_010514742.10.0PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6335e-55AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A178UP041e-121A0A178UP04_ARATH; AGL99
TrEMBLQ9LZ611e-121Q9LZ61_ARATH; AGAMOUS-like 99
STRINGXP_010514729.10.0(Camelina sativa)
STRINGXP_010514742.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1671128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04640.11e-114AGAMOUS-like 99
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]