PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g030580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HSF | ||||||||
Protein Properties | Length: 166aa MW: 19568.8 Da PI: 6.6892 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.9 | 1e-35 | 21 | 113 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F+ k+y++++d++++ li+w nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+k+ll++ Csa01g030580.1 21 FIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFLRGQKHLLRN 106 9********************999*****************************************999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i r+k++ Csa01g030580.1 107 IARRKHA 113 ****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 7.0E-55 | 17 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.9E-34 | 18 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.7E-38 | 18 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 9.0E-31 | 21 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.5E-19 | 21 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.5E-19 | 59 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 60 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.5E-19 | 72 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MEDDNNNTNT NTNTNNVIAP FIVKTYQMVN DPSTDWLITW GPAHNSFIVV DPLDFSQRIL 60 PAYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEHFLRGQ KHLLRNIARR KHARGMYGQD 120 LEDGEIVREI ERLKEEQREL EAEIQKMNQR IEAXIFSLFS LSKIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-27 | 18 | 110 | 17 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g030580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY056111 | 1e-142 | AY056111.1 Arabidopsis thaliana AT3g24520/MOB24_5 mRNA, complete cds. | |||
GenBank | AY072614 | 1e-142 | AY072614.1 Arabidopsis thaliana AT3g24520/MOB24_5 mRNA, complete cds. | |||
GenBank | HQ322382 | 1e-142 | HQ322382.1 Arabidopsis thaliana heat shock factor (HSF) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019085425.1 | 1e-120 | PREDICTED: heat stress transcription factor C-1-like | ||||
Swissprot | Q9LV52 | 5e-97 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | D7L548 | 8e-96 | D7L548_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010513564.1 | 1e-111 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6775 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 1e-98 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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