PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g030360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 296aa MW: 34469.5 Da PI: 8.6953 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.2 | 1e-13 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ien+ r + kRr+g+lKK E+ +LCd++++vi+fs++ Csa01g030360.1 11 IENDNSRVIRSKKRREGLLKKIDEVTILCDVKACVIMFSPE 51 99999999999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.2E-20 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-19 | 1 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.451 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.69E-24 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 1.4E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-13 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MARKKIKLAW IENDNSRVIR SKKRREGLLK KIDEVTILCD VKACVIMFSP EEDYPMVWPS 60 LKQARDLLDD FFALPEIEKK RKETSLESYL KEKTKKVQEQ LMKTHKKNQN YAIDQLMLQL 120 HRGRSIADLN LNEIYALIYF SKDNVILHRK RLHFVQHSPL RDPPVPLFHR KFEEFETTTN 180 DVFARGHQED ERAWNTNEAM KEININAAIP GNQSCYLIDQ WFPLQGNNIN GKTNLEMEPI 240 VAPVISFHGL VGSVSQPLQH HNTNNNPSMA MSQPNQCPYD FMNPEFGGQR ERKHC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKIKLAWIENDNSRVIRSKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g030360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019096769.1 | 0.0 | PREDICTED: floral homeotic protein PMADS 1-like | ||||
TrEMBL | V4NQI0 | 1e-112 | V4NQI0_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.19424s0082.1.p | 1e-136 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4724 | 14 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 1e-100 | AGAMOUS-like 48 |