PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g029360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 370aa MW: 40391.7 Da PI: 5.1452 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 4.9e-10 | 200 | 247 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq Csa01g029360.1 200 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 247 8**************************....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.29E-17 | 194 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.36E-11 | 194 | 251 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-17 | 196 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.542 | 196 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-7 | 200 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-10 | 202 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MNMDKETEQT LNYLPLGQSD PFGNGSDGSI GDFLGRYCNP QEISPLTLQS FSLNSQISEN 60 FPISGGIRFP PYPGQFGTDR EFGVLGSQPT TQESNKSSLL DPDSVSDRVQ TTKSNSRKRK 120 SIPTGNGKES PASSSLTASN SKVSGENGGS RAGKRSKQDE AGSSKNGIEK CDSKGDDAKP 180 PEAPKDYIHV RARRGQATDS HSLAERARRE KISERMTLLQ DLVPGCNRIT GKAVMLDEII 240 NYVQSLQRQV EFLSMKLATV NPRMEFNANA ALSTEMIQPG ESLTQSLYAI ACSEQRLPSA 300 YYSLGKNMPR FSDTQFPSND GFVQAETPGF WENNDLQSIV QMGFGDIQQQ SSNNNNNCSE 360 PTLQMKLEP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 120 | SRKRKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g029360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY065441 | 0.0 | AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds. | |||
GenBank | AY096536 | 0.0 | AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010512743.1 | 0.0 | PREDICTED: transcription factor bHLH77-like | ||||
Swissprot | Q9LK48 | 0.0 | BH077_ARATH; Transcription factor bHLH77 | ||||
TrEMBL | R0HM89 | 0.0 | R0HM89_9BRAS; Uncharacterized protein | ||||
STRING | XP_010512743.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7406 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23690.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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