PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g028340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 283aa    MW: 32775.3 Da    PI: 9.7696
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g028340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.61.4e-221462149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+i+n+sn qvtfskRr g++KKA+EL++LC+ae+++i+fs+ gk + +
  Csa01g028340.1 14 KKIKNESNLQVTFSKRRFGLFKKASELCTLCGAEILMIVFSPGGKAFSF 62
                    68******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.063666IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-34665IPR002100Transcription factor, MADS-box
CDDcd002651.74E-38783No hitNo description
SuperFamilySSF554551.57E-28793IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-20828IPR002100Transcription factor, MADS-box
PfamPF003192.9E-241562IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-202843IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-204364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MVRSNKGRQK IEMKKIKNES NLQVTFSKRR FGLFKKASEL CTLCGAEILM IVFSPGGKAF  60
SFGHPGVKEL IHRFLNVNHN SLIPHQPNYN LQLDESCLDR NIQYLNEMLT QVLARQENAK  120
HNRMALDMVR QSTDERGKSW KTFSFSHPGV RELIHRFLNV DHNSLIPHQP NYSLQLAESR  180
SHRNIQYLNE MLTQVRARQE KAKHNRMTLD MIYMGESFVF GGGRNVDVGG IDLFDQKVNT  240
FSYNPVMDFP YQTPFFGYNN DGVIGPGYNM NYMSSYNFNE RY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-15796186Myocyte-specific enhancer factor 2A
3kov_B2e-15796186Myocyte-specific enhancer factor 2A
3kov_I2e-15796186Myocyte-specific enhancer factor 2A
3kov_J2e-15796186Myocyte-specific enhancer factor 2A
3p57_A2e-15796186Myocyte-specific enhancer factor 2A
3p57_B2e-15796186Myocyte-specific enhancer factor 2A
3p57_C2e-15796186Myocyte-specific enhancer factor 2A
3p57_D2e-15796186Myocyte-specific enhancer factor 2A
3p57_I2e-15796186Myocyte-specific enhancer factor 2A
3p57_J2e-15796186Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g028340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421657.11e-142PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A178UZM54e-82A0A178UZM5_ARATH; Uncharacterized protein
TrEMBLO232224e-82O23222_ARATH; MADS-box protein
STRINGXP_010421678.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142941022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-78M-type_MADS family protein