PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g028320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 254aa    MW: 29173.3 Da    PI: 9.0375
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g028320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.81.2e-221462149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+i+n+sn qvtfskRr g++KKA+EL++LC+ae+++i+fs+ gk + +
  Csa01g028320.1 14 KKIKNESNLQVTFSKRRFGLFKKASELCTLCGAEILMIVFSPGGKAFSF 62
                    68******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.063666IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-34665IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-28793IPR002100Transcription factor, MADS-box
CDDcd002658.45E-39783No hitNo description
PRINTSPR004045.4E-20828IPR002100Transcription factor, MADS-box
PfamPF003192.4E-241562IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-202843IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-204364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVRSNKGRQK IEMKKIKNES NLQVTFSKRR FGLFKKASEL CTLCGAEILM IVFSPGGKAF  60
SFGHPGVKEL IHRFLNVNHN SLIPHQPNYN LQLAESCLDR NIQYLNEMLT QVLARQEKAK  120
HNRMALDMVR QSREERGKSW YEKDVKELDL NETDNLICAL QDVKKKVVSE MSDYPQLNVS  180
HQSYMGETFV FGGGRNVDVG GIDLFDQRVN TFSYNPVMDF PYQTPFFGYN NDGVIVPGYN  240
MNYMSSHNFN GRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A5e-16796186Myocyte-specific enhancer factor 2A
3kov_B5e-16796186Myocyte-specific enhancer factor 2A
3kov_I5e-16796186Myocyte-specific enhancer factor 2A
3kov_J5e-16796186Myocyte-specific enhancer factor 2A
3p57_A5e-16796186Myocyte-specific enhancer factor 2A
3p57_B5e-16796186Myocyte-specific enhancer factor 2A
3p57_C5e-16796186Myocyte-specific enhancer factor 2A
3p57_D5e-16796186Myocyte-specific enhancer factor 2A
3p57_I5e-16796186Myocyte-specific enhancer factor 2A
3p57_J5e-16796186Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g028320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421657.10.0PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A178UZM51e-114A0A178UZM5_ARATH; Uncharacterized protein
TrEMBLO232221e-114O23222_ARATH; MADS-box protein
STRINGXP_010421657.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142941022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-119M-type_MADS family protein