PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g027760.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 141aa    MW: 16334.7 Da    PI: 8.8672
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g027760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-201970256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +++GVr+++ +g+++AeIrdps ng  +r +lg+f taeeAa+a+++a+ +l+g+
  Csa01g027760.1 19 RFRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAFNLRGH 70
                    69*******.**********98887..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.2E-251125IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000184.72E-281878No hitNo description
PROSITE profilePS5103224.6841977IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-311979IPR001471AP2/ERF domain
SMARTSM003807.3E-371983IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-231978IPR016177DNA-binding domain
PfamPF008476.4E-151970IPR001471AP2/ERF domain
PRINTSPR003673.6E-112031IPR001471AP2/ERF domain
PRINTSPR003673.6E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MESSNRRSNN QSHDDKQARF RGVRRRPWGK FAAEIRDPSR NGARLWLGTF ETAEEAARAY  60
DRAAFNLRGH LAILNFPNEY YSRMDDYSLR PPYASSSSSS SGSTSTNVSR QSQREVFEFE  120
YLDDRVLEEL LDSEERNRRN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-331712612114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g027760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256081e-176AB025608.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15.
GenBankAJ5803771e-176AJ580377.1 Arabidopsis thaliana mRNA for putative ethylene responsive element binding protein.
GenBankCP0026861e-176CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512193.11e-97PREDICTED: ethylene-responsive transcription factor ERF098
SwissprotQ9LTC52e-74ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLR0HQU31e-79R0HQU3_9BRAS; Uncharacterized protein
STRINGXP_010512193.15e-97(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-59ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]