PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g027740.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 330aa MW: 36292.5 Da PI: 4.865

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g027740.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	9.8e-11	176	223	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f L ++l + + +K +K++iL A++ +++L Csa01g027740.1 176 TKACREKLRREKLNDRFMDLSSVLEPG---RTPKTDKVAILDDAIRVVNQL 223 6789********************8...8**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.54E-13	163	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.22E-9	163	224	No hit	No description
PROSITE profile	PS50888	13.154	172	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-8	176	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-10	178	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-12	178	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MYPSIHDDDD LLAALCFDQS NGVEDPYGFI QTNEDGTNIF QDFGSSGVNL QQPQQQGLQF 60 DSFSGNLEQV CSFRGENEGV VYSSSIGSPQ LDLGASFSGV LQQKTQQVCG FRGGNDDSSA 120 AAPHLLQQGP GQVVCSDVVE INSSSSVGGV KEELEHVEEE CSKKRRRTGS CNKPGTKACR 180 EKLRREKLND RFMDLSSVLE PGRTPKTDKV AILDDAIRVV NQLRGEAHEL KETNQKLLEE 240 IKNLKAEKNE LREEKLVLKA DKEKIEQELK SMAVPPSGFM PPQHPAAFHP NKMAVFPSYG 300 YYPNMSMWPF VNPAGRDSSQ DVKDHAPVA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g027740.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010512182.1	0.0	PREDICTED: transcription factor bHLH34-like
Swissprot	Q9LTC7	1e-180	BH034_ARATH; Transcription factor bHLH34
TrEMBL	R0HMW7	0.0	R0HMW7_9BRAS; Uncharacterized protein
STRING	XP_010512182.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4026	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	1e-164	bHLH family protein

Publications ? help Back to Top
Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]