PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g026120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 399aa    MW: 45897 Da    PI: 4.7461
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g026120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.2e-35541462103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed+++++++sws+++nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  Csa01g026120.1  54 FLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQKHLLKN 139
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  Csa01g026120.1 140 IRRRKTS 146
                     ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.3E-3649143IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-6050143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.1E-3950143IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.4E-3154143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-195477IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-1992104IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434093117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-19105117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDPSFRFIKE EFPTGFSDSP SPPSSMAETA PYDPTTLCYP QPIEGLHESG PPPFLTKTYD  60
LVEDSRTNHV VSWSKSNNSF IVWDPQAFSV TLLPRFFKHN NFSSFVRQLN TYGFRKVNPD  120
RWEFANEGFL RGQKHLLKNI RRRKTSNNSN QLQQPQGSEQ QSLDNCCIEV GRYGLDGEMD  180
SLKRDKQVLM MELVRLRQQQ QSTKMYLTTI EEKLKKTESK QQQMMSFLAR AMQNPDFIQQ  240
LVEQKEKRKE IEEAISKKRQ RPIDQGKRNV VNVGDYDDES GYGNNAAAST SAFVDMNQET  300
YGNMSQFEMS ELDTLAMHIQ GLGDHSTREE FLNVGKGNEE EEEGQQRGYQ KEKMEIYGEG  360
FWEDLLNEGQ NFDFEGDQEN VDVLIEQLGY LGSNSHIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-254914612123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g026120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459740.0AY045974.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
GenBankAY0793740.0AY079374.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511753.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH80.0HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLR0G5K10.0R0G5K1_9BRAS; Uncharacterized protein
STRINGXP_010511753.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.10.0heat shock transcription factor A6B