PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g025110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CO-like | ||||||||
Protein Properties | Length: 392aa MW: 43283.9 Da PI: 5.9508 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.7 | 1e-07 | 6 | 48 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 e+kC+++ ++ ++C+++ lC +C +++H+ Ht+ Csa01g025110.1 6 EPKCDHCATAQAVIYCKSDLAKLCLNCDVHIHSAnplshrHTR 48 89*******99********************966888855655 PP | |||||||
2 | CCT | 62 | 1.9e-21 | 337 | 380 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a+lRYkeKr +R F K+irY+sRKa+A++R+RvKGrFvk+ Csa01g025110.1 337 RNQAKLRYKEKRLKRTFGKQIRYASRKARADTRKRVKGRFVKAG 380 99***************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.6E-9 | 4 | 51 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.532 | 4 | 51 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-5 | 6 | 48 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.62E-5 | 7 | 51 | No hit | No description |
PROSITE profile | PS51017 | 14.525 | 337 | 379 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.2E-16 | 337 | 379 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MSLSMEPKCD HCATAQAVIY CKSDLAKLCL NCDVHIHSAN PLSHRHTRSL ICQKCYSQPA 60 VIRCLDDKVS YCQGCHWHAS NCSALGPKLQ TLNPFSGCPS PTDFVRMWSS ILEPSVSGLV 120 SPFVGSFPLN GPNNDVFGMA KFNELDGLIA SSYSMVPHNI SYTENLSDQS SFFCMESKGC 180 PDLFLKLEED LCEDLNLDNA PLNFDVGDDI IGCSSEEHIE PDHTVPNCLL IDKDNTSLTA 240 SNFTTIDKAL ETTSPGQQDY TSYQTGPFQM NINTTGLPLP PSPVLFGQIH PTMSLTISNV 300 TGETSAADYQ DCGMNPGFIM TEAPWESNLE LRCPQARNQA KLRYKEKRLK RTFGKQIRYA 360 SRKARADTRK RVKGRFVKAG DNYDYDPSSP V* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g025110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP000739 | 1e-132 | AP000739.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MEK6. | |||
GenBank | CP002686 | 1e-132 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019082952.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 12-like | ||||
Swissprot | Q9LJ44 | 0.0 | COL12_ARATH; Zinc finger protein CONSTANS-LIKE 12 | ||||
TrEMBL | V4M5W2 | 0.0 | V4M5W2_EUTSA; Uncharacterized protein | ||||
STRING | XP_010510784.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5319 | 22 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21880.1 | 0.0 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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