PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g025110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 392aa    MW: 43283.9 Da    PI: 5.9508
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g025110.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.71e-07648339
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    e+kC+++   ++ ++C+++   lC +C +++H+       Ht+
  Csa01g025110.1  6 EPKCDHCATAQAVIYCKSDLAKLCLNCDVHIHSAnplshrHTR 48
                    89*******99********************966888855655 PP

2CCT621.9e-21337380144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a+lRYkeKr +R F K+irY+sRKa+A++R+RvKGrFvk+ 
  Csa01g025110.1 337 RNQAKLRYKEKRLKRTFGKQIRYASRKARADTRKRVKGRFVKAG 380
                     99***************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-9451IPR000315B-box-type zinc finger
PROSITE profilePS501198.532451IPR000315B-box-type zinc finger
PfamPF006431.1E-5648IPR000315B-box-type zinc finger
CDDcd000211.62E-5751No hitNo description
PROSITE profilePS5101714.525337379IPR010402CCT domain
PfamPF062036.2E-16337379IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSLSMEPKCD HCATAQAVIY CKSDLAKLCL NCDVHIHSAN PLSHRHTRSL ICQKCYSQPA  60
VIRCLDDKVS YCQGCHWHAS NCSALGPKLQ TLNPFSGCPS PTDFVRMWSS ILEPSVSGLV  120
SPFVGSFPLN GPNNDVFGMA KFNELDGLIA SSYSMVPHNI SYTENLSDQS SFFCMESKGC  180
PDLFLKLEED LCEDLNLDNA PLNFDVGDDI IGCSSEEHIE PDHTVPNCLL IDKDNTSLTA  240
SNFTTIDKAL ETTSPGQQDY TSYQTGPFQM NINTTGLPLP PSPVLFGQIH PTMSLTISNV  300
TGETSAADYQ DCGMNPGFIM TEAPWESNLE LRCPQARNQA KLRYKEKRLK RTFGKQIRYA  360
SRKARADTRK RVKGRFVKAG DNYDYDPSSP V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g025110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0007391e-132AP000739.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MEK6.
GenBankCP0026861e-132CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082952.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like
SwissprotQ9LJ440.0COL12_ARATH; Zinc finger protein CONSTANS-LIKE 12
TrEMBLV4M5W20.0V4M5W2_EUTSA; Uncharacterized protein
STRINGXP_010510784.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. OrdoƱez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]