PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa01g024440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 376aa MW: 41678.8 Da PI: 6.5727 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.9 | 1.7e-08 | 284 | 324 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P +K++ a++L +A +Y+k L Csa01g024440.1 284 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 324 69******************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.123 | 275 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-13 | 280 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.22E-11 | 281 | 329 | No hit | No description |
SMART | SM00353 | 5.9E-13 | 281 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-12 | 283 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.7E-6 | 284 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 376 aa Download sequence Send to blast |
MCSAVITTRI VFDLMEGLES VYAQAMYGMT RESKLMDHHQ GSDLIWGGNE LMMARELCSS 60 SSSFHHHHQL INPSLSSCFM SDIGVLGEIQ QQQEHVGNRA TSIDPSSLDC LLSATSNSNN 120 TSTEDDEGIS VLFSDSQTLW SFGGVSSAES ENREITPETA TTTTVKPKCL KRNRGGDEKG 180 SHFRLVRPQD DSEKGGFKLI YDEDQSKSKK PRTEKERGGS SNISFQHSTC VSDNTEPDAE 240 AIAQMKEMIY RAAAFRPVNF GLEVVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT 300 LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDP TNLSFSSAPS PSFPLFHPSF 360 LPLQNPNQIH HHPEC* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 284 | 289 | RQRRER |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa01g024440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF488617 | 0.0 | AF488617.1 Arabidopsis thaliana clone bHLH087 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AP001305 | 0.0 | AP001305.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9. | |||
GenBank | BT020364 | 0.0 | BT020364.1 Arabidopsis thaliana At3g21330 gene, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010510125.1 | 0.0 | PREDICTED: transcription factor bHLH87-like | ||||
Swissprot | Q8S3D2 | 0.0 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | R0G609 | 0.0 | R0G609_9BRAS; Uncharacterized protein | ||||
STRING | XP_010510125.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7960 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21330.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|