PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g023820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 242aa    MW: 26368.3 Da    PI: 8.9265
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g023820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.7e-19200233235
            GATA   2 snCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     +nC++ +Tp+WRrgp g+k+LCnaCG+++rk+++
  Csa01g023820.1 200 VNCNALTTPMWRRGPLGPKSLCNACGIKFRKEEE 233
                     39*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.3E-9193241IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.99E-10196233No hitNo description
PfamPF003201.5E-16198233IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.688200229IPR000679Zinc finger, GATA-type
CDDcd002021.89E-10200230No hitNo description
Gene3DG3DSA:3.30.50.101.1E-12200233IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MENELDLTLK LGLPNSTVVE THLSLNTSTT TSTITDQGTT NTNVGDGGRE DHNNNNEGSR  60
GGSSNDGGEV FNLRRAVWGD HEVINDQGAR SNMDMNIRVY NYIFQQFVGV PNTLNVAVPN  120
TLNVGPYPMT PSPRSTPALA VTPEFVLIDV PSRRASRSNT ELMANAWNET PSAHAKRLRG  180
SGGYYSGGRG EGTLRKCTNV NCNALTTPMW RRGPLGPKSL CNACGIKFRK EEERKSKRNR  240
E*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g023820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936251e-50AB493625.1 Arabidopsis thaliana At3g20750 mRNA for hypothetical protein, partial cds, clone: RAAt3g20750.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509263.11e-178PREDICTED: GATA transcription factor 29-like
SwissprotQ9LT456e-64GAT29_ARATH; GATA transcription factor 29
TrEMBLR0GBK12e-85R0GBK1_9BRAS; Uncharacterized protein
STRINGXP_010509263.11e-178(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.14e-51GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]