PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g023690.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 315aa    MW: 34042.3 Da    PI: 8.2753
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g023690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.15e-062052431154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  Csa01g023690.1 205 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 243
                     5778999***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.735194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0075200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-11204258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-6204248No hitNo description
Gene3DG3DSA:4.10.280.105.8E-10208252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MTNNNRGFFL DHQFSPHGSS STDSSTVTCQ GFSVDNSSNN TLYAAAATTT PNSSSGMFHQ  60
HKTASFGSSD QQPSRNHQQS TLGYSQYGSS TGNYDQMASA LSNSTWFLRA SPPKPHSPLR  120
FSNNATFWNP AAAGNAGPPP HDASSNFFPA LQPPQIHAPS FDEQPKNISE IRDSSNKEVK  180
RGRGDQPAAK RAKSEAASPS PAFKVRKEKM GDRIAALQQL VSPFGKTDAA SVLSEAIEYI  240
KFLHQQVSAL SSPYMKSGAS LQHQQSDHPK ELEVSEEPDL RSRGLCLVPV SSTFPVTHDT  300
TVDFWTPTFG GTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g023690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180540.0AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBankBT0085800.0BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466266.10.0PREDICTED: transcription factor bHLH123
SwissprotQ8GXT31e-170BH123_ARATH; Transcription factor bHLH123
TrEMBLR0HLE70.0R0HLE7_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010466266.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-167bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]