PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g021520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 511aa    MW: 57629.3 Da    PI: 10.4099
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g021520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.22.5e-243683451
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ++s r ++++kRr++++KKA+ELS+LC+++v+vi+++++g+l+++++
  Csa01g021520.1 36 ASSSARATSLIKRRETVFKKANELSILCGIDVCVIYYGPDGELKTWPK 83
                    68999*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-111384IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.28E-1636115IPR002100Transcription factor, MADS-box
PfamPF003191.4E-163781IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.5313785IPR002100Transcription factor, MADS-box
CDDcd002668.36E-1845109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MVSFSSCCPS TSTSTKKNSM RFPQIQQTVF KKPYSASSSA RATSLIKRRE TVFKKANELS  60
ILCGIDVCVI YYGPDGELKT WPKEREKVTA LALRYGALSE RKRRKGRVDL YEFLDKINND  120
DSKKKQNKQK KEKPVRRVAK VKYPVWDPRV RAVVEGQGQR KIQYLNMASQ GPMMPSTMNQ  180
YFQQQPNQHV SMFLYNHGNG NVSQIPVSAS ALNQGQSLAP IPSELMIHPN QDVGNYSGSL  240
GVQGTGINGC QNMKXRPSLR KLTSFQFYGE LKTWPKEREK VTALALRYGA LSERKRRKGR  300
VDLYEFLDKI NNDDSKKKQN KQKKEKPVRR VAKVKYPVWD PRVRAVVEGQ GQRKIQYLNM  360
ASQGPMMPST MNQYFQQQPN QHVSMFLYNH GNGNVSQIPV SASALNQGQS LAPIPSELMI  420
HPNQDVGNYS GSLGVQGTGI NGCQNMKMLT YNNINSFNGF SKQIDQNSRV GSYSSLLEDG  480
IDEFEDSRNN FNAEDYSGFL GAGFLGRKER *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g021520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019101736.11e-148PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL103, partial
SwissprotQ9LSB25e-98AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLR0I8551e-107R0I855_9BRAS; Uncharacterized protein
STRINGXP_010468267.11e-137(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.13e-95AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]