PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g021240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 352aa    MW: 39940.8 Da    PI: 6.6312
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g021240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.21e-55431691129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL +kv+++ ++  +++ +vd++k+ePwdLp+k++ +ekewyfFs+rd+ky+tg r+nrat++gyWk+tgkdke+++ 
  Csa01g021240.1  43 LPPGFRFHPTDEELITHYLGRKVSDTGFTG-KAVVDVDLNKCEPWDLPAKASMGEKEWYFFSQRDRKYPTGLRTNRATEAGYWKTTGKDKEIYR- 135
                     79*************************999.88***************999999****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +g lvg+kktLvfykgrapkgek++Wvmheyrle
  Csa01g021240.1 136 SGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 169
                     999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-6439190IPR003441NAC domain
PROSITE profilePS5100560.70143190IPR003441NAC domain
PfamPF023652.4E-2944168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
VTLIIEKLLA VNLLRLLQER EENHSSYFCC LELDDKKKME DNLPPGFRFH PTDEELITHY  60
LGRKVSDTGF TGKAVVDVDL NKCEPWDLPA KASMGEKEWY FFSQRDRKYP TGLRTNRATE  120
AGYWKTTGKD KEIYRSGVLV GMKKTLVFYK GRAPKGEKSN WVMHEYRLES KQPFNPTNKE  180
EWVVCRVFEK STATKKAQEQ QPQSSQPSFG SPCDANSSMA NEFEDIEIPN LNSNSSTIDY  240
NNHIHQYSQR NVYSEDNSTS TAGVNMNMNM ASTNLPSWTT SLLGPPLSPI NSLLLKAFQI  300
RNTYGFPKEM IPNFNPSSLQ QGGSNTMQNG SSSSHVQPQP QEEAFNMDSI W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-574219616171NO APICAL MERISTEM PROTEIN
1ut4_B2e-574219616171NO APICAL MERISTEM PROTEIN
1ut7_A2e-574219616171NO APICAL MERISTEM PROTEIN
1ut7_B2e-574219616171NO APICAL MERISTEM PROTEIN
4dul_A2e-574219616171NAC domain-containing protein 19
4dul_B2e-574219616171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g021240.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266580.0AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506887.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-82NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A178VF420.0A0A178VF42_ARATH; NAC058
TrEMBLD7L8H70.0D7L8H7_ARALL; Predicted protein
STRINGXP_010506887.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.10.0NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]