PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g019700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 352aa MW: 41146.2 Da PI: 10.6255 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.2 | 3.1e-18 | 19 | 112 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk++ ++d +++++ +p +f+++++ kk s +++++ ++g+sW+v++ +k+ + y+++ +GW +Fv++n L ++f++F ++g++ f +v Csa01g019700.1 19 FFKIFQSADLSSEHMRAFPYNFMSKIS-KKDFSYKMVIRAQWGKSWNVEV--SKNTRYYYIEkRGWDQFVSDNSLGRNEFITFIHKGKMIF--NV 108 99*********************9996.457999****************..888888555549********************9998988..77 PP EEE- CS B3 95 kvfr 98 ++++ Csa01g019700.1 109 HIYE 112 7765 PP | |||||||
2 | B3 | 39.3 | 1.2e-12 | 261 | 337 | 13 | 95 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++ l +pk+f+++h ++sk+ t+++++g+sW+v + + r+++++G ++ +++ + +gD ++Fkl++ +fe+v+ Csa01g019700.1 261 LKFLAIPKQFVDDHLP--QKSKMFTIRHPNGKSWKVLC--LVREIRTIFSGGYSKLAREFPISVGDKCTFKLID--TFEFVLD 337 45689********963..47889***************..8888899************************997..5555665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-18 | 14 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-19 | 14 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.58E-15 | 19 | 111 | No hit | No description |
SMART | SM01019 | 1.6E-19 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-17 | 19 | 112 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.169 | 19 | 114 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-18 | 248 | 338 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.856 | 249 | 342 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-16 | 250 | 338 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.20E-13 | 250 | 338 | No hit | No description |
SMART | SM01019 | 2.5E-14 | 252 | 342 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-11 | 259 | 337 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MGWNTGFDRI KEERKNLGFF KIFQSADLSS EHMRAFPYNF MSKISKKDFS YKMVIRAQWG 60 KSWNVEVSKN TRYYYIEKRG WDQFVSDNSL GRNEFITFIH KGKMIFNVHI YEQNCMEILI 120 PRNLLSMGSS KKFKKKKKKK TKSFALMMKT GGIKREEGDC SYKDVKKEDE EIDESPGRVE 180 IKIRKKKTEE TKTSKKKMLN KKVKNGMERG ESSRGVELKG MKKKAEASIS SKKNRKSKSK 240 INKKVIDGVP EFEITIKKSY LKFLAIPKQF VDDHLPQKSK MFTIRHPNGK SWKVLCLVRE 300 IRTIFSGGYS KLAREFPISV GDKCTFKLID TFEFVLDIPK KTREEIPFMI D* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 138 | KKFKKKKKK |
2 | 133 | 139 | KKKKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g019700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493618 | 5e-82 | AB493618.1 Arabidopsis thaliana At3g17010 mRNA for hypothetical protein, partial cds, clone: RAAt3g17010. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010504892.1 | 0.0 | PREDICTED: B3 domain-containing protein At3g17010-like | ||||
Swissprot | Q9LSP6 | 1e-138 | Y3701_ARATH; B3 domain-containing protein At3g17010 | ||||
TrEMBL | R0I7T0 | 1e-171 | R0I7T0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010504892.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17010.1 | 1e-119 | B3 family protein |
Publications ? help Back to Top | |||
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